miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 3' -55.4 NC_001847.1 + 34110 0.69 0.763335
Target:  5'- cGCGGCGGCg-GAGCCUg--CGGCg- -3'
miRNA:   3'- uCGCUGCUGaaCUCGGAgaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 76603 0.66 0.896412
Target:  5'- uGGCGGCGGCgaagaccgcgGcGGCCUCUUCGuGUc- -3'
miRNA:   3'- -UCGCUGCUGaa--------C-UCGGAGAAGC-CGag -5'
6347 3' -55.4 NC_001847.1 + 117877 0.67 0.860254
Target:  5'- -cCGGCGAC-UGGGCCUg--CGGCUg -3'
miRNA:   3'- ucGCUGCUGaACUCGGAgaaGCCGAg -5'
6347 3' -55.4 NC_001847.1 + 112683 0.69 0.753616
Target:  5'- uGCGACGGCUccUGccGCCUCUgccGCUCg -3'
miRNA:   3'- uCGCUGCUGA--ACu-CGGAGAagcCGAG- -5'
6347 3' -55.4 NC_001847.1 + 105190 0.66 0.902945
Target:  5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3'
miRNA:   3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 88889 0.69 0.743786
Target:  5'- cGGCGGCGGCUcccGCCgggggCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGAacuCGGagaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 53018 0.69 0.733854
Target:  5'- cAGCGGCGGCcgcUGcGCgCUCgggccUCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGa--ACuCG-GAGa----AGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 5186 0.66 0.902945
Target:  5'- cGCGGCG-CggGAGaagcCCUCgcCGGCUCu -3'
miRNA:   3'- uCGCUGCuGaaCUC----GGAGaaGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 4313 0.74 0.459961
Target:  5'- uGGCGGCGGCUaUGAcgGCCgCUUCGGC-Cg -3'
miRNA:   3'- -UCGCUGCUGA-ACU--CGGaGAAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 116401 0.73 0.506307
Target:  5'- cGGCGGCGGCgcucUGGGCCccgggccgcgcgCUUgGGCUCg -3'
miRNA:   3'- -UCGCUGCUGa---ACUCGGa-----------GAAgCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 96304 0.67 0.852359
Target:  5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3'
miRNA:   3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 96388 0.67 0.852359
Target:  5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3'
miRNA:   3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 104542 0.67 0.860254
Target:  5'- cGCGGCGGCcccgGGGCCgCUacgCGGCg- -3'
miRNA:   3'- uCGCUGCUGaa--CUCGGaGAa--GCCGag -5'
6347 3' -55.4 NC_001847.1 + 92486 0.67 0.867178
Target:  5'- cGCGGCGGC---GGCCUCUUCgacaaagGGCa- -3'
miRNA:   3'- uCGCUGCUGaacUCGGAGAAG-------CCGag -5'
6347 3' -55.4 NC_001847.1 + 13712 0.66 0.902945
Target:  5'- cGGCGGCGGuc-GGGCCgCUcaaCGGCUCc -3'
miRNA:   3'- -UCGCUGCUgaaCUCGGaGAa--GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 15588 0.7 0.672684
Target:  5'- aGGCGGCGGCUcGuAGCC-CUUCGaCUCc -3'
miRNA:   3'- -UCGCUGCUGAaC-UCGGaGAAGCcGAG- -5'
6347 3' -55.4 NC_001847.1 + 1137 0.7 0.672684
Target:  5'- cAGCGGCGGC----GCCUCggcgcgCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGaacuCGGAGaa----GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 89051 0.71 0.662314
Target:  5'- gGGCGACGGCaUGGcgcGCCgggUUUCGGCg- -3'
miRNA:   3'- -UCGCUGCUGaACU---CGGa--GAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 74721 0.71 0.631089
Target:  5'- cGCGugGACgccGAGCCU--UCGGCg- -3'
miRNA:   3'- uCGCugCUGaa-CUCGGAgaAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 15385 0.73 0.528212
Target:  5'- gGGCGGuCGGCgucggggcugGGGCCgggUUUCGGCUCg -3'
miRNA:   3'- -UCGCU-GCUGaa--------CUCGGa--GAAGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.