miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 3' -55.4 NC_001847.1 + 37572 0.68 0.818784
Target:  5'- cGCGGCGGCgcuGGCCgCUgCGGCUg -3'
miRNA:   3'- uCGCUGCUGaacUCGGaGAaGCCGAg -5'
6347 3' -55.4 NC_001847.1 + 45426 0.66 0.902945
Target:  5'- gAGCGAaGGCUUGAGCCcagggCgcccgucgCGGCg- -3'
miRNA:   3'- -UCGCUgCUGAACUCGGa----Gaa------GCCGag -5'
6347 3' -55.4 NC_001847.1 + 45682 0.7 0.713727
Target:  5'- cGCGAUGcGCUUGuuggcguaGGCCUCcggugggCGGCUCa -3'
miRNA:   3'- uCGCUGC-UGAAC--------UCGGAGaa-----GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 53018 0.69 0.733854
Target:  5'- cAGCGGCGGCcgcUGcGCgCUCgggccUCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGa--ACuCG-GAGa----AGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 56898 0.66 0.909235
Target:  5'- cGCGGCGACgucGGCCUCcagGGCg- -3'
miRNA:   3'- uCGCUGCUGaacUCGGAGaagCCGag -5'
6347 3' -55.4 NC_001847.1 + 59245 0.69 0.772933
Target:  5'- cGGCGAUGGCgccggccaGGGCCaugaUUUGGCUCu -3'
miRNA:   3'- -UCGCUGCUGaa------CUCGGag--AAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 66245 0.71 0.631089
Target:  5'- cGCGGCGGCgcucggcaUGcugggccggggaGGCCUCUUCGGCcCg -3'
miRNA:   3'- uCGCUGCUGa-------AC------------UCGGAGAAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 67306 0.7 0.713727
Target:  5'- cGGCGACGGCccuuuUUGGGCCgcgCggacgccgCGGCUUu -3'
miRNA:   3'- -UCGCUGCUG-----AACUCGGa--Gaa------GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 71103 0.74 0.469436
Target:  5'- aGGCGAgaGGCggagUGGuGCCUCUUCGGCg- -3'
miRNA:   3'- -UCGCUg-CUGa---ACU-CGGAGAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 74721 0.71 0.631089
Target:  5'- cGCGugGACgccGAGCCU--UCGGCg- -3'
miRNA:   3'- uCGCugCUGaa-CUCGGAgaAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 75738 0.69 0.753616
Target:  5'- cAGCGAUGACcgccGcGCCUCcgcCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGaa--CuCGGAGaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 76603 0.66 0.896412
Target:  5'- uGGCGGCGGCgaagaccgcgGcGGCCUCUUCGuGUc- -3'
miRNA:   3'- -UCGCUGCUGaa--------C-UCGGAGAAGC-CGag -5'
6347 3' -55.4 NC_001847.1 + 80746 0.66 0.875398
Target:  5'- cGCGGCGGCgcccGCCUCgcccgCGGC-Cg -3'
miRNA:   3'- uCGCUGCUGaacuCGGAGaa---GCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 81155 0.66 0.896412
Target:  5'- aAGCGACGACU--GGCCcgccgcgccgcUCggagGGCUCg -3'
miRNA:   3'- -UCGCUGCUGAacUCGG-----------AGaag-CCGAG- -5'
6347 3' -55.4 NC_001847.1 + 88889 0.69 0.743786
Target:  5'- cGGCGGCGGCUcccGCCgggggCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGAacuCGGagaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 89051 0.71 0.662314
Target:  5'- gGGCGACGGCaUGGcgcGCCgggUUUCGGCg- -3'
miRNA:   3'- -UCGCUGCUGaACU---CGGa--GAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 92486 0.67 0.867178
Target:  5'- cGCGGCGGC---GGCCUCUUCgacaaagGGCa- -3'
miRNA:   3'- uCGCUGCUGaacUCGGAGAAG-------CCGag -5'
6347 3' -55.4 NC_001847.1 + 95284 0.66 0.889641
Target:  5'- cGCGugGACga-AGCCUaccggCGGCUg -3'
miRNA:   3'- uCGCugCUGaacUCGGAgaa--GCCGAg -5'
6347 3' -55.4 NC_001847.1 + 96304 0.67 0.852359
Target:  5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3'
miRNA:   3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 96388 0.67 0.852359
Target:  5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3'
miRNA:   3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.