miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 3' -55.4 NC_001847.1 + 1137 0.7 0.672684
Target:  5'- cAGCGGCGGC----GCCUCggcgcgCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGaacuCGGAGaa----GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 2377 0.66 0.902945
Target:  5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3'
miRNA:   3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 2669 0.66 0.889641
Target:  5'- -cCGGCGGCUc-GGCCggCaUCGGCUCg -3'
miRNA:   3'- ucGCUGCUGAacUCGGa-GaAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 4313 0.74 0.459961
Target:  5'- uGGCGGCGGCUaUGAcgGCCgCUUCGGC-Cg -3'
miRNA:   3'- -UCGCUGCUGA-ACU--CGGaGAAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 5186 0.66 0.902945
Target:  5'- cGCGGCG-CggGAGaagcCCUCgcCGGCUCu -3'
miRNA:   3'- uCGCUGCuGaaCUC----GGAGaaGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 9870 0.69 0.753616
Target:  5'- uGCGACGGCUccUGccGCCUCUgccGCUCg -3'
miRNA:   3'- uCGCUGCUGA--ACu-CGGAGAagcCGAG- -5'
6347 3' -55.4 NC_001847.1 + 12458 0.72 0.56887
Target:  5'- cGCGcGCGGCg-GAGCCUCcgCGGCUUc -3'
miRNA:   3'- uCGC-UGCUGaaCUCGGAGaaGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 13237 0.66 0.909235
Target:  5'- cGCGAUGGCcagcgGGGCCacgCgggCGGUUCg -3'
miRNA:   3'- uCGCUGCUGaa---CUCGGa--Gaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 13712 0.66 0.902945
Target:  5'- cGGCGGCGGuc-GGGCCgCUcaaCGGCUCc -3'
miRNA:   3'- -UCGCUGCUgaaCUCGGaGAa--GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 14406 0.67 0.852359
Target:  5'- aGGaGGCGACc-GAGCCUCUgugcggGGCUCc -3'
miRNA:   3'- -UCgCUGCUGaaCUCGGAGAag----CCGAG- -5'
6347 3' -55.4 NC_001847.1 + 15385 0.73 0.528212
Target:  5'- gGGCGGuCGGCgucggggcugGGGCCgggUUUCGGCUCg -3'
miRNA:   3'- -UCGCU-GCUGaa--------CUCGGa--GAAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 15588 0.7 0.672684
Target:  5'- aGGCGGCGGCUcGuAGCC-CUUCGaCUCc -3'
miRNA:   3'- -UCGCUGCUGAaC-UCGGaGAAGCcGAG- -5'
6347 3' -55.4 NC_001847.1 + 16609 0.66 0.896412
Target:  5'- cGGCGAUcaGACgcUGAGCa---UCGGCUCg -3'
miRNA:   3'- -UCGCUG--CUGa-ACUCGgagaAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 18093 0.68 0.80993
Target:  5'- gGGCGA-GGCUUccGCCUCcUCGGCg- -3'
miRNA:   3'- -UCGCUgCUGAAcuCGGAGaAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 19007 0.68 0.80993
Target:  5'- gGGCGGCGcCcucGGCCUCUUCGcGCg- -3'
miRNA:   3'- -UCGCUGCuGaacUCGGAGAAGC-CGag -5'
6347 3' -55.4 NC_001847.1 + 21364 0.72 0.610261
Target:  5'- cGuCGGCGGCUcgGGccGCCUCgggCGGCUCg -3'
miRNA:   3'- uC-GCUGCUGAa-CU--CGGAGaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 30538 0.68 0.827462
Target:  5'- cGCGACGuCgccGAGCUcgUCgcgCGGCUCc -3'
miRNA:   3'- uCGCUGCuGaa-CUCGG--AGaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 34082 0.69 0.763335
Target:  5'- cGCGGCGGCcccgGGGCCggCcUCGGCg- -3'
miRNA:   3'- uCGCUGCUGaa--CUCGGa-GaAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 34110 0.69 0.763335
Target:  5'- cGCGGCGGCg-GAGCCUg--CGGCg- -3'
miRNA:   3'- uCGCUGCUGaaCUCGGAgaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 35910 0.68 0.800909
Target:  5'- uGgGACGGCgcguggGAGCCUUUguggCGGCg- -3'
miRNA:   3'- uCgCUGCUGaa----CUCGGAGAa---GCCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.