miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 3' -55.4 NC_001847.1 + 132351 1.09 0.002457
Target:  5'- gAGCGACGACUUGAGCCUCUUCGGCUCu -3'
miRNA:   3'- -UCGCUGCUGAACUCGGAGAAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 130260 0.69 0.753616
Target:  5'- uGCGACGACaaaaUGGGCUUCcgcgUGGCUg -3'
miRNA:   3'- uCGCUGCUGa---ACUCGGAGaa--GCCGAg -5'
6347 3' -55.4 NC_001847.1 + 129454 0.67 0.835955
Target:  5'- aAGCGGCuACUUGAGCUgg--CGGC-Cg -3'
miRNA:   3'- -UCGCUGcUGAACUCGGagaaGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 117939 0.66 0.909235
Target:  5'- cGGuCGACGACUccGGGCuCUUUUCGcGCa- -3'
miRNA:   3'- -UC-GCUGCUGAa-CUCG-GAGAAGC-CGag -5'
6347 3' -55.4 NC_001847.1 + 117877 0.67 0.860254
Target:  5'- -cCGGCGAC-UGGGCCUg--CGGCUg -3'
miRNA:   3'- ucGCUGCUGaACUCGGAgaaGCCGAg -5'
6347 3' -55.4 NC_001847.1 + 116552 0.72 0.599869
Target:  5'- aGGCGACGugUgccUGGGCgaCUUUGGCg- -3'
miRNA:   3'- -UCGCUGCugA---ACUCGgaGAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 116401 0.73 0.506307
Target:  5'- cGGCGGCGGCgcucUGGGCCccgggccgcgcgCUUgGGCUCg -3'
miRNA:   3'- -UCGCUGCUGa---ACUCGGa-----------GAAgCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 114647 0.68 0.79173
Target:  5'- cGCGACGACgcgcGAGCCgUCUUC--CUCg -3'
miRNA:   3'- uCGCUGCUGaa--CUCGG-AGAAGccGAG- -5'
6347 3' -55.4 NC_001847.1 + 112683 0.69 0.753616
Target:  5'- uGCGACGGCUccUGccGCCUCUgccGCUCg -3'
miRNA:   3'- uCGCUGCUGA--ACu-CGGAGAagcCGAG- -5'
6347 3' -55.4 NC_001847.1 + 107999 0.66 0.902945
Target:  5'- cGCGGCG-CggGAGaagcCCUCgcCGGCUCu -3'
miRNA:   3'- uCGCUGCuGaaCUC----GGAGaaGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 107646 0.66 0.882635
Target:  5'- cGGCGGCGGCcgaGGCCUCUgccgccgaagcCGGCg- -3'
miRNA:   3'- -UCGCUGCUGaacUCGGAGAa----------GCCGag -5'
6347 3' -55.4 NC_001847.1 + 107126 0.74 0.459961
Target:  5'- uGGCGGCGGCUaUGAcgGCCgCUUCGGC-Cg -3'
miRNA:   3'- -UCGCUGCUGA-ACU--CGGaGAAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 105770 0.68 0.80993
Target:  5'- cGCGGCGGCc---GCCUCggCGGCa- -3'
miRNA:   3'- uCGCUGCUGaacuCGGAGaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 105190 0.66 0.902945
Target:  5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3'
miRNA:   3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 104542 0.67 0.860254
Target:  5'- cGCGGCGGCcccgGGGCCgCUacgCGGCg- -3'
miRNA:   3'- uCGCUGCUGaa--CUCGGaGAa--GCCGag -5'
6347 3' -55.4 NC_001847.1 + 103950 0.7 0.672684
Target:  5'- cAGCGGCGGC----GCCUCggcgcgCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGaacuCGGAGaa----GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 102315 0.67 0.867936
Target:  5'- cGGCGGCcACgcGGGCCUCg-CGcGCUCg -3'
miRNA:   3'- -UCGCUGcUGaaCUCGGAGaaGC-CGAG- -5'
6347 3' -55.4 NC_001847.1 + 101594 0.75 0.396678
Target:  5'- cGCGGCGuCUgccGCCUCUUCGGCg- -3'
miRNA:   3'- uCGCUGCuGAacuCGGAGAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 96929 0.67 0.867936
Target:  5'- aGGCGcGCGGCccGGGCCUCcgcgggCGGCa- -3'
miRNA:   3'- -UCGC-UGCUGaaCUCGGAGaa----GCCGag -5'
6347 3' -55.4 NC_001847.1 + 96548 0.74 0.450589
Target:  5'- aGGCGACGcgcgcgcucaACgccagGAGCCUCcgCGGCUCc -3'
miRNA:   3'- -UCGCUGC----------UGaa---CUCGGAGaaGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.