miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 112783 0.68 0.697104
Target:  5'- cGAGGACuGGCgccccGAGGCGCugcgCCUCGCcaUCGa -3'
miRNA:   3'- uCUUCUG-CUG-----CUCCGCG----GGAGCG--AGC- -5'
6347 5' -58.3 NC_001847.1 + 48641 0.67 0.736269
Target:  5'- ---cGGCGGCGGGGCGCCgC-CGCc-- -3'
miRNA:   3'- ucuuCUGCUGCUCCGCGG-GaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 60826 0.67 0.736269
Target:  5'- uGAuGGCGcgaGGGGCGCCCgcggCGCUgCGc -3'
miRNA:   3'- uCUuCUGCug-CUCCGCGGGa---GCGA-GC- -5'
6347 5' -58.3 NC_001847.1 + 59174 0.67 0.764749
Target:  5'- cAGggGGCGGCGgucgaGGGgGCCgUCGUa-- -3'
miRNA:   3'- -UCuuCUGCUGC-----UCCgCGGgAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 65877 0.67 0.774025
Target:  5'- gAGcuGACGugGGGGcCGCCCaugCGC-Ca -3'
miRNA:   3'- -UCuuCUGCugCUCC-GCGGGa--GCGaGc -5'
6347 5' -58.3 NC_001847.1 + 132330 0.66 0.783178
Target:  5'- cGGAGGugcCGGCGcggcuGGCGgCCgCGCUCGc -3'
miRNA:   3'- -UCUUCu--GCUGCu----CCGCgGGaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 10862 0.66 0.801081
Target:  5'- cGAGGcGCGGCGggcgcGGGCGCCCagGCa-- -3'
miRNA:   3'- uCUUC-UGCUGC-----UCCGCGGGagCGagc -5'
6347 5' -58.3 NC_001847.1 + 35199 0.72 0.470423
Target:  5'- gAGGAGcgcgcGCGGCuGGGCGCCCUgCGCgCGg -3'
miRNA:   3'- -UCUUC-----UGCUGcUCCGCGGGA-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 87614 0.73 0.434272
Target:  5'- -uGAGACGGCGGcuuuGGCGCCCgggcugCGCUgGa -3'
miRNA:   3'- ucUUCUGCUGCU----CCGCGGGa-----GCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 8826 0.66 0.826801
Target:  5'- aAGGAGAgauccCGACGGGGCuGUuucaUCUCGCUUu -3'
miRNA:   3'- -UCUUCU-----GCUGCUCCG-CG----GGAGCGAGc -5'
6347 5' -58.3 NC_001847.1 + 23723 0.71 0.517652
Target:  5'- cAGAGGuCGAUcAGGCGCUCUUGgUCGu -3'
miRNA:   3'- -UCUUCuGCUGcUCCGCGGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 53885 0.7 0.556744
Target:  5'- cGggGGCGGCGGGcccccCGUCCUCGCgaCGg -3'
miRNA:   3'- uCuuCUGCUGCUCc----GCGGGAGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 125157 0.7 0.576616
Target:  5'- cGucGAUGGCGAGGCGCag-CGcCUCGg -3'
miRNA:   3'- uCuuCUGCUGCUCCGCGggaGC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 82821 0.7 0.59664
Target:  5'- cGAAGGCGACGGcGCGaCCCggUCGUUUGc -3'
miRNA:   3'- uCUUCUGCUGCUcCGC-GGG--AGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 15828 0.66 0.81839
Target:  5'- cGAAGGCGaggGCGAauucGCGCCUUUGCccUCGg -3'
miRNA:   3'- uCUUCUGC---UGCUc---CGCGGGAGCG--AGC- -5'
6347 5' -58.3 NC_001847.1 + 83767 0.69 0.616766
Target:  5'- uGGGAcacCGGCGAGGCaGCCCUCGaagCGc -3'
miRNA:   3'- -UCUUcu-GCUGCUCCG-CGGGAGCga-GC- -5'
6347 5' -58.3 NC_001847.1 + 134289 0.66 0.826801
Target:  5'- ----cGCGugGAGGUGCUCUC-CUCc -3'
miRNA:   3'- ucuucUGCugCUCCGCGGGAGcGAGc -5'
6347 5' -58.3 NC_001847.1 + 10349 0.66 0.783178
Target:  5'- gAGAAcGGCGGCGAGGgGgCCgcCGC-CGa -3'
miRNA:   3'- -UCUU-CUGCUGCUCCgCgGGa-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 86503 0.69 0.657092
Target:  5'- cGggGGCGGC--GGCGCCC-CGC-CGc -3'
miRNA:   3'- uCuuCUGCUGcuCCGCGGGaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 9744 0.68 0.667145
Target:  5'- cGAccGGGCGGgcccugcccCGGGGCGCCCgcuuacCGCUCc -3'
miRNA:   3'- uCU--UCUGCU---------GCUCCGCGGGa-----GCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.