miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 18961 0.69 0.656086
Target:  5'- cGGgcGGCGACGAccagcgcggccgcGGCGCCCgcggccgccagCGcCUCGg -3'
miRNA:   3'- -UCuuCUGCUGCU-------------CCGCGGGa----------GC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 42433 0.68 0.67717
Target:  5'- cGguGGCGGCGAuGGCGCg--CGCUCGu -3'
miRNA:   3'- uCuuCUGCUGCU-CCGCGggaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 132697 0.75 0.321617
Target:  5'- cGggGACGGCGAGGCggcgGCCCU-GC-CGg -3'
miRNA:   3'- uCuuCUGCUGCUCCG----CGGGAgCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 87614 0.73 0.434272
Target:  5'- -uGAGACGGCGGcuuuGGCGCCCgggcugCGCUgGa -3'
miRNA:   3'- ucUUCUGCUGCU----CCGCGGGa-----GCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 43093 0.72 0.4797
Target:  5'- ---cGGCGGCgGAGGCGCCCggaggCGC-CGg -3'
miRNA:   3'- ucuuCUGCUG-CUCCGCGGGa----GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 23723 0.71 0.517652
Target:  5'- cAGAGGuCGAUcAGGCGCUCUUGgUCGu -3'
miRNA:   3'- -UCUUCuGCUGcUCCGCGGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 20789 0.7 0.566658
Target:  5'- gGGggGcugcagcaucGCGGCGGgugcuucggcGGCGCUUUCGCUCGc -3'
miRNA:   3'- -UCuuC----------UGCUGCU----------CCGCGGGAGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 125157 0.7 0.576616
Target:  5'- cGucGAUGGCGAGGCGCag-CGcCUCGg -3'
miRNA:   3'- uCuuCUGCUGCUCCGCGggaGC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 106788 0.69 0.606694
Target:  5'- cGAGGGCGcCGGGG-GCCCgggCGCgCGg -3'
miRNA:   3'- uCUUCUGCuGCUCCgCGGGa--GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 83767 0.69 0.616766
Target:  5'- uGGGAcacCGGCGAGGCaGCCCUCGaagCGc -3'
miRNA:   3'- -UCUUcu-GCUGCUCCG-CGGGAGCga-GC- -5'
6347 5' -58.3 NC_001847.1 + 85236 0.66 0.801081
Target:  5'- cGAAGGCGGcCGGcGGCGCCaggUGCgCGa -3'
miRNA:   3'- uCUUCUGCU-GCU-CCGCGGga-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 578 0.66 0.801081
Target:  5'- uGgcGGCGACGAGGCcGUCUUUGUg-- -3'
miRNA:   3'- uCuuCUGCUGCUCCG-CGGGAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 89710 0.68 0.67717
Target:  5'- ----cGCGACG-GGCGCCCUgGgCUCa -3'
miRNA:   3'- ucuucUGCUGCuCCGCGGGAgC-GAGc -5'
6347 5' -58.3 NC_001847.1 + 76657 0.68 0.697104
Target:  5'- cGAGGGCGGgGAgGGCGCCUUuuucgaccCGUUCa -3'
miRNA:   3'- uCUUCUGCUgCU-CCGCGGGA--------GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 92591 0.68 0.716827
Target:  5'- aGGAGGACG-CGGccGCGUCCUCGCccUCa -3'
miRNA:   3'- -UCUUCUGCuGCUc-CGCGGGAGCG--AGc -5'
6347 5' -58.3 NC_001847.1 + 86521 0.67 0.736269
Target:  5'- ---cGGCGGCuGGGCGCCCgcgUGCUgGc -3'
miRNA:   3'- ucuuCUGCUGcUCCGCGGGa--GCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 23779 0.67 0.764749
Target:  5'- cGGAugcccGGGCG-CGAGGuCGCCCagCGCggCGg -3'
miRNA:   3'- -UCU-----UCUGCuGCUCC-GCGGGa-GCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 124781 0.67 0.774025
Target:  5'- gGGggGcuuuCGGCGGcGGCcCCCUCGC-CGc -3'
miRNA:   3'- -UCuuCu---GCUGCU-CCGcGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 17736 0.66 0.783178
Target:  5'- ---cGGCGuACGAGGCGgCCacggccucgCGCUCGc -3'
miRNA:   3'- ucuuCUGC-UGCUCCGCgGGa--------GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 132330 0.66 0.783178
Target:  5'- cGGAGGugcCGGCGcggcuGGCGgCCgCGCUCGc -3'
miRNA:   3'- -UCUUCu--GCUGCu----CCGCgGGaGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.