miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 10096 0.69 0.626849
Target:  5'- cGGGAGcacaaGCGGCGGGGaaagcCGCCUUCGCggCGa -3'
miRNA:   3'- -UCUUC-----UGCUGCUCC-----GCGGGAGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 132672 0.69 0.636937
Target:  5'- ---cGGCGGCgGGGGCGCCgCcgccCGCUCGa -3'
miRNA:   3'- ucuuCUGCUG-CUCCGCGG-Ga---GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 42315 0.69 0.640971
Target:  5'- cGAAGAgGGCGAguguuucgugcugugGGCGCCCguguggCGCggCGg -3'
miRNA:   3'- uCUUCUgCUGCU---------------CCGCGGGa-----GCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 109822 0.69 0.64702
Target:  5'- cGGGAGcCGGCcuuuGGGcGCGCCCUCG-UCGg -3'
miRNA:   3'- -UCUUCuGCUG----CUC-CGCGGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 100619 0.69 0.64702
Target:  5'- cGGcGGGCGGCGcaucgccGGCGCcguccgcgucggCCUCGCUCGc -3'
miRNA:   3'- -UCuUCUGCUGCu------CCGCG------------GGAGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 27886 0.69 0.64702
Target:  5'- cGGuuGGAUGGCGAGGUcgccgGCCCggccgCGCUUGc -3'
miRNA:   3'- -UCu-UCUGCUGCUCCG-----CGGGa----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 50669 0.69 0.64702
Target:  5'- uGGAGGGCGACGugcccugcGGGCuGUgCUCGCgCGa -3'
miRNA:   3'- -UCUUCUGCUGC--------UCCG-CGgGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 18961 0.69 0.656086
Target:  5'- cGGgcGGCGACGAccagcgcggccgcGGCGCCCgcggccgccagCGcCUCGg -3'
miRNA:   3'- -UCuuCUGCUGCU-------------CCGCGGGa----------GC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 102231 0.69 0.657092
Target:  5'- cGGGcgGGACGGCGuccAGGCGCUCgCGCgCGg -3'
miRNA:   3'- -UCU--UCUGCUGC---UCCGCGGGaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 38503 0.69 0.657092
Target:  5'- cGGggGGCGGCGcGGuCGCCggCGCUg- -3'
miRNA:   3'- -UCuuCUGCUGCuCC-GCGGgaGCGAgc -5'
6347 5' -58.3 NC_001847.1 + 71433 0.69 0.657092
Target:  5'- gGGAGGgugcacACGACGAGGUugGCCCcgggCGCUUc -3'
miRNA:   3'- -UCUUC------UGCUGCUCCG--CGGGa---GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 86503 0.69 0.657092
Target:  5'- cGggGGCGGC--GGCGCCC-CGC-CGc -3'
miRNA:   3'- uCuuCUGCUGcuCCGCGGGaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 57593 0.69 0.657092
Target:  5'- cGGAAaGCGcACGAGGgugcgccaCGCCCUCGCgcUCGc -3'
miRNA:   3'- -UCUUcUGC-UGCUCC--------GCGGGAGCG--AGC- -5'
6347 5' -58.3 NC_001847.1 + 74972 0.69 0.657092
Target:  5'- uGggGACagcgacggGGCGGGGCGCCag-GCUCa -3'
miRNA:   3'- uCuuCUG--------CUGCUCCGCGGgagCGAGc -5'
6347 5' -58.3 NC_001847.1 + 27523 0.69 0.657092
Target:  5'- cGgcGGCGGCGGGGaCGCCCgagaacggcggCGCggCGg -3'
miRNA:   3'- uCuuCUGCUGCUCC-GCGGGa----------GCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 112557 0.68 0.667145
Target:  5'- cGAccGGGCGGgcccugcccCGGGGCGCCCgcuuacCGCUCc -3'
miRNA:   3'- uCU--UCUGCU---------GCUCCGCGGGa-----GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 133182 0.68 0.667145
Target:  5'- cGcGGGCG-CG-GGCuGCCCUCGCUgGa -3'
miRNA:   3'- uCuUCUGCuGCuCCG-CGGGAGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 86307 0.68 0.667145
Target:  5'- ----cGCGGcCGAGGCGCCCcCGCgCGg -3'
miRNA:   3'- ucuucUGCU-GCUCCGCGGGaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 9971 0.68 0.667145
Target:  5'- cGAGGACuGGgcccCGAGGCGCugcgCCUCGCcaUCGa -3'
miRNA:   3'- uCUUCUG-CU----GCUCCGCG----GGAGCG--AGC- -5'
6347 5' -58.3 NC_001847.1 + 9744 0.68 0.667145
Target:  5'- cGAccGGGCGGgcccugcccCGGGGCGCCCgcuuacCGCUCc -3'
miRNA:   3'- uCU--UCUGCU---------GCUCCGCGGGa-----GCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.