miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 131817 0.7 0.556744
Target:  5'- cGGAGGcCGGCGccggcggcagcGGCGCCCgcgccgCGCUCGc -3'
miRNA:   3'- -UCUUCuGCUGCu----------CCGCGGGa-----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 20789 0.7 0.566658
Target:  5'- gGGggGcugcagcaucGCGGCGGgugcuucggcGGCGCUUUCGCUCGc -3'
miRNA:   3'- -UCuuC----------UGCUGCU----------CCGCGGGAGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 20262 0.7 0.566658
Target:  5'- gAGAgcgAGACGGCGAggucGGCGCCg-CGCgUCGg -3'
miRNA:   3'- -UCU---UCUGCUGCU----CCGCGGgaGCG-AGC- -5'
6347 5' -58.3 NC_001847.1 + 96949 0.7 0.576616
Target:  5'- cGcGGGCGGC-AGGCGCuCUUCGUUCGc -3'
miRNA:   3'- uCuUCUGCUGcUCCGCG-GGAGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 22344 0.7 0.576616
Target:  5'- cGucGAUGGCGAGGCGCag-CGcCUCGg -3'
miRNA:   3'- uCuuCUGCUGCUCCGCGggaGC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 125157 0.7 0.576616
Target:  5'- cGucGAUGGCGAGGCGCag-CGcCUCGg -3'
miRNA:   3'- uCuuCUGCUGCUCCGCGggaGC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 58353 0.7 0.576616
Target:  5'- cAGAGGGCGGCcAGGCGCgggacgucggCCUCGUagCGg -3'
miRNA:   3'- -UCUUCUGCUGcUCCGCG----------GGAGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 79873 0.7 0.585611
Target:  5'- uGAAGGCcACGcgcaaaaAGGCGCCaaugCGCUCGg -3'
miRNA:   3'- uCUUCUGcUGC-------UCCGCGGga--GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 70701 0.7 0.586612
Target:  5'- cGGgcGGCGGCgGGGGCGCCCgcggcgagCGCg-- -3'
miRNA:   3'- -UCuuCUGCUG-CUCCGCGGGa-------GCGagc -5'
6347 5' -58.3 NC_001847.1 + 34279 0.7 0.586612
Target:  5'- ---cGGCGGCuGGGCGCCg-CGCUCGc -3'
miRNA:   3'- ucuuCUGCUGcUCCGCGGgaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 116618 0.7 0.59664
Target:  5'- cGcGGACGGCGGcGCGCCCgcagCGCUgGc -3'
miRNA:   3'- uCuUCUGCUGCUcCGCGGGa---GCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 82821 0.7 0.59664
Target:  5'- cGAAGGCGACGGcGCGaCCCggUCGUUUGc -3'
miRNA:   3'- uCUUCUGCUGCUcCGC-GGG--AGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 12571 0.69 0.606694
Target:  5'- cGGgcGccGCGuACGcGGCGCCCUCGCacUCGu -3'
miRNA:   3'- -UCuuC--UGC-UGCuCCGCGGGAGCG--AGC- -5'
6347 5' -58.3 NC_001847.1 + 488 0.69 0.606694
Target:  5'- cGgcGGCGGCGGGGCGgCCgCGCg-- -3'
miRNA:   3'- uCuuCUGCUGCUCCGCgGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 6096 0.69 0.606694
Target:  5'- cGGAGGCGcgagacgcccGCGAGGCGCggcgcgagcgCCUCGC-CGc -3'
miRNA:   3'- uCUUCUGC----------UGCUCCGCG----------GGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 103301 0.69 0.606694
Target:  5'- cGgcGGCGGCGGGGCGgCCgCGCg-- -3'
miRNA:   3'- uCuuCUGCUGCUCCGCgGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 106788 0.69 0.606694
Target:  5'- cGAGGGCGcCGGGG-GCCCgggCGCgCGg -3'
miRNA:   3'- uCUUCUGCuGCUCCgCGGGa--GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 73231 0.69 0.616766
Target:  5'- aGGAGGGgGGCGGcGGCGCgggcgCGCUCGa -3'
miRNA:   3'- -UCUUCUgCUGCU-CCGCGgga--GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 83767 0.69 0.616766
Target:  5'- uGGGAcacCGGCGAGGCaGCCCUCGaagCGc -3'
miRNA:   3'- -UCUUcu-GCUGCUCCG-CGGGAGCga-GC- -5'
6347 5' -58.3 NC_001847.1 + 10096 0.69 0.626849
Target:  5'- cGGGAGcacaaGCGGCGGGGaaagcCGCCUUCGCggCGa -3'
miRNA:   3'- -UCUUC-----UGCUGCUCC-----GCGGGAGCGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.