miRNA display CGI


Results 41 - 60 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 29004 0.7 0.556744
Target:  5'- cGGAGGcCGGCGccggcggcagcGGCGCCCgcgccgCGCUCGc -3'
miRNA:   3'- -UCUUCuGCUGCu----------CCGCGGGa-----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 29517 0.66 0.783178
Target:  5'- cGGAGGugcCGGCGcggcuGGCGgCCgCGCUCGc -3'
miRNA:   3'- -UCUUCu--GCUGCu----CCGCgGGaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 29884 0.75 0.321617
Target:  5'- cGggGACGGCGAGGCggcgGCCCU-GC-CGg -3'
miRNA:   3'- uCuuCUGCUGCUCCG----CGGGAgCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 30695 0.72 0.45215
Target:  5'- gGGGAGACGA--GGGCaGCCCggCGCUCc -3'
miRNA:   3'- -UCUUCUGCUgcUCCG-CGGGa-GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 31189 0.66 0.7922
Target:  5'- cGGAGccgcGCGcCGAGGCGCCgC-CGCUgGu -3'
miRNA:   3'- uCUUC----UGCuGCUCCGCGG-GaGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 31476 0.66 0.826801
Target:  5'- ----cGCGugGAGGUGCUCUC-CUCc -3'
miRNA:   3'- ucuucUGCugCUCCGCGGGAGcGAGc -5'
6347 5' -58.3 NC_001847.1 + 31549 0.67 0.745862
Target:  5'- cGGAcGACGACGAGGCcgGCgC-CGC-CGg -3'
miRNA:   3'- -UCUuCUGCUGCUCCG--CGgGaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 32034 0.68 0.67717
Target:  5'- cGggGcGCGGgGAcGGCGCCCgcgcggGCUCGg -3'
miRNA:   3'- uCuuC-UGCUgCU-CCGCGGGag----CGAGC- -5'
6347 5' -58.3 NC_001847.1 + 32095 0.68 0.716827
Target:  5'- --cGGGCGuCGGGGCgcgagGCCCggGCUCGg -3'
miRNA:   3'- ucuUCUGCuGCUCCG-----CGGGagCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 32660 0.7 0.555756
Target:  5'- cGAGGugGACGGcgccggcGGCGCgggCC-CGCUCGa -3'
miRNA:   3'- uCUUCugCUGCU-------CCGCG---GGaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 33509 0.66 0.809814
Target:  5'- cGGgcGGCGGCG-GGCGCCgC-CGCg-- -3'
miRNA:   3'- -UCuuCUGCUGCuCCGCGG-GaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 34279 0.7 0.586612
Target:  5'- ---cGGCGGCuGGGCGCCg-CGCUCGc -3'
miRNA:   3'- ucuuCUGCUGcUCCGCGGgaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 35122 0.68 0.716827
Target:  5'- uGGAGGGCGACcuGGCGgccgugCCUCgGCUCGc -3'
miRNA:   3'- -UCUUCUGCUGcuCCGCg-----GGAG-CGAGC- -5'
6347 5' -58.3 NC_001847.1 + 35199 0.72 0.470423
Target:  5'- gAGGAGcgcgcGCGGCuGGGCGCCCUgCGCgCGg -3'
miRNA:   3'- -UCUUC-----UGCUGcUCCGCGGGA-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 35965 0.66 0.783178
Target:  5'- cGAGGACcACGAgGGCGCCaaggCGCgCGc -3'
miRNA:   3'- uCUUCUGcUGCU-CCGCGGga--GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 36703 0.71 0.508045
Target:  5'- cGgcGugGugGAGGCGgCUUCGgUCGc -3'
miRNA:   3'- uCuuCugCugCUCCGCgGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 37190 0.76 0.293712
Target:  5'- cGGGAGAgccCGguGCGAGGCGCCCggugcCGCUUGg -3'
miRNA:   3'- -UCUUCU---GC--UGCUCCGCGGGa----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 37565 0.66 0.81839
Target:  5'- cGGAAGACG-CGGcGGCGCUggcCGCUgCGg -3'
miRNA:   3'- -UCUUCUGCuGCU-CCGCGGga-GCGA-GC- -5'
6347 5' -58.3 NC_001847.1 + 38503 0.69 0.657092
Target:  5'- cGGggGGCGGCGcGGuCGCCggCGCUg- -3'
miRNA:   3'- -UCuuCUGCUGCuCC-GCGGgaGCGAgc -5'
6347 5' -58.3 NC_001847.1 + 40365 0.68 0.67717
Target:  5'- uGGAGGCGGCucauguAGGCGCucaCCUCGCggugCGa -3'
miRNA:   3'- uCUUCUGCUGc-----UCCGCG---GGAGCGa---GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.