miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 17736 0.66 0.783178
Target:  5'- ---cGGCGuACGAGGCGgCCacggccucgCGCUCGc -3'
miRNA:   3'- ucuuCUGC-UGCUCCGCgGGa--------GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 18961 0.69 0.656086
Target:  5'- cGGgcGGCGACGAccagcgcggccgcGGCGCCCgcggccgccagCGcCUCGg -3'
miRNA:   3'- -UCuuCUGCUGCU-------------CCGCGGGa----------GC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 20262 0.7 0.566658
Target:  5'- gAGAgcgAGACGGCGAggucGGCGCCg-CGCgUCGg -3'
miRNA:   3'- -UCU---UCUGCUGCU----CCGCGGgaGCG-AGC- -5'
6347 5' -58.3 NC_001847.1 + 20496 0.69 0.626849
Target:  5'- aGGAAGACGGCucGcGCGUCgUCGCgggCGg -3'
miRNA:   3'- -UCUUCUGCUGcuC-CGCGGgAGCGa--GC- -5'
6347 5' -58.3 NC_001847.1 + 20789 0.7 0.566658
Target:  5'- gGGggGcugcagcaucGCGGCGGgugcuucggcGGCGCUUUCGCUCGc -3'
miRNA:   3'- -UCuuC----------UGCUGCU----------CCGCGGGAGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 21586 0.66 0.7922
Target:  5'- gAGggGGCcGCGGGGCcccGCCCcccuaaacUCGCUgGc -3'
miRNA:   3'- -UCuuCUGcUGCUCCG---CGGG--------AGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 21968 0.67 0.774025
Target:  5'- gGGggGcuuuCGGCGGcGGCcCCCUCGC-CGc -3'
miRNA:   3'- -UCuuCu---GCUGCU-CCGcGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 22111 0.66 0.783178
Target:  5'- cGggGGCGacaGCGGGcGCGCCCUgGgCcCGg -3'
miRNA:   3'- uCuuCUGC---UGCUC-CGCGGGAgC-GaGC- -5'
6347 5' -58.3 NC_001847.1 + 22344 0.7 0.576616
Target:  5'- cGucGAUGGCGAGGCGCag-CGcCUCGg -3'
miRNA:   3'- uCuuCUGCUGCUCCGCGggaGC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 22498 0.73 0.425488
Target:  5'- gAGGAGGaaaGGCGGGGCGCUCUgGCagGg -3'
miRNA:   3'- -UCUUCUg--CUGCUCCGCGGGAgCGagC- -5'
6347 5' -58.3 NC_001847.1 + 23416 0.68 0.67717
Target:  5'- cGggGucguCGGCGGGGCGUCCggGgUCGu -3'
miRNA:   3'- uCuuCu---GCUGCUCCGCGGGagCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 23723 0.71 0.517652
Target:  5'- cAGAGGuCGAUcAGGCGCUCUUGgUCGu -3'
miRNA:   3'- -UCUUCuGCUGcUCCGCGGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 23779 0.67 0.764749
Target:  5'- cGGAugcccGGGCG-CGAGGuCGCCCagCGCggCGg -3'
miRNA:   3'- -UCU-----UCUGCuGCUCC-GCGGGa-GCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 23957 0.75 0.300506
Target:  5'- uGAAGACgGGCGAGaaGCCCUCGCUg- -3'
miRNA:   3'- uCUUCUG-CUGCUCcgCGGGAGCGAgc -5'
6347 5' -58.3 NC_001847.1 + 25285 0.67 0.745862
Target:  5'- uGAAcaccGCGcaccACGuGGCGCCCUCGC-CGa -3'
miRNA:   3'- uCUUc---UGC----UGCuCCGCGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 27523 0.69 0.657092
Target:  5'- cGgcGGCGGCGGGGaCGCCCgagaacggcggCGCggCGg -3'
miRNA:   3'- uCuuCUGCUGCUCC-GCGGGa----------GCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 27836 0.68 0.706997
Target:  5'- cGGAGAuCGGCGAGGaCGCCggCGC-Ca -3'
miRNA:   3'- uCUUCU-GCUGCUCC-GCGGgaGCGaGc -5'
6347 5' -58.3 NC_001847.1 + 27886 0.69 0.64702
Target:  5'- cGGuuGGAUGGCGAGGUcgccgGCCCggccgCGCUUGc -3'
miRNA:   3'- -UCu-UCUGCUGCUCCG-----CGGGa----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 27929 0.67 0.759128
Target:  5'- cGGAGGACG-CGGacaggccugggccgcGGCGCgCgCGCUCGc -3'
miRNA:   3'- -UCUUCUGCuGCU---------------CCGCGgGaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 28093 0.68 0.67717
Target:  5'- cGGggGGCGGC--GGUGCCCUCGg--- -3'
miRNA:   3'- -UCuuCUGCUGcuCCGCGGGAGCgagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.