Results 21 - 40 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 96949 | 0.7 | 0.576616 |
Target: 5'- cGcGGGCGGC-AGGCGCuCUUCGUUCGc -3' miRNA: 3'- uCuUCUGCUGcUCCGCG-GGAGCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 131817 | 0.7 | 0.556744 |
Target: 5'- cGGAGGcCGGCGccggcggcagcGGCGCCCgcgccgCGCUCGc -3' miRNA: 3'- -UCUUCuGCUGCu----------CCGCGGGa-----GCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 104956 | 0.72 | 0.461239 |
Target: 5'- cGAAGGCGAgCGccGGGCGCCaggGCUCGg -3' miRNA: 3'- uCUUCUGCU-GC--UCCGCGGgagCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 23957 | 0.75 | 0.300506 |
Target: 5'- uGAAGACgGGCGAGaaGCCCUCGCUg- -3' miRNA: 3'- uCUUCUG-CUGCUCcgCGGGAGCGAgc -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 50669 | 0.69 | 0.64702 |
Target: 5'- uGGAGGGCGACGugcccugcGGGCuGUgCUCGCgCGa -3' miRNA: 3'- -UCUUCUGCUGC--------UCCG-CGgGAGCGaGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 106788 | 0.69 | 0.606694 |
Target: 5'- cGAGGGCGcCGGGG-GCCCgggCGCgCGg -3' miRNA: 3'- uCUUCUGCuGCUCCgCGGGa--GCGaGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 32660 | 0.7 | 0.555756 |
Target: 5'- cGAGGugGACGGcgccggcGGCGCgggCC-CGCUCGa -3' miRNA: 3'- uCUUCugCUGCU-------CCGCG---GGaGCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 37190 | 0.76 | 0.293712 |
Target: 5'- cGGGAGAgccCGguGCGAGGCGCCCggugcCGCUUGg -3' miRNA: 3'- -UCUUCU---GC--UGCUCCGCGGGa----GCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 82821 | 0.7 | 0.59664 |
Target: 5'- cGAAGGCGACGGcGCGaCCCggUCGUUUGc -3' miRNA: 3'- uCUUCUGCUGCUcCGC-GGG--AGCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 81815 | 0.76 | 0.274048 |
Target: 5'- cGGAGGCGGCGGGGCGCgCCgucugUCGCcCGc -3' miRNA: 3'- uCUUCUGCUGCUCCGCG-GG-----AGCGaGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 53885 | 0.7 | 0.556744 |
Target: 5'- cGggGGCGGCGGGcccccCGUCCUCGCgaCGg -3' miRNA: 3'- uCuuCUGCUGCUCc----GCGGGAGCGa-GC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 125157 | 0.7 | 0.576616 |
Target: 5'- cGucGAUGGCGAGGCGCag-CGcCUCGg -3' miRNA: 3'- uCuuCUGCUGCUCCGCGggaGC-GAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 70372 | 0.71 | 0.508045 |
Target: 5'- gAGggGGCGcCGGGGCGCgagCUCGCg-- -3' miRNA: 3'- -UCuuCUGCuGCUCCGCGg--GAGCGagc -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 35199 | 0.72 | 0.470423 |
Target: 5'- gAGGAGcgcgcGCGGCuGGGCGCCCUgCGCgCGg -3' miRNA: 3'- -UCUUC-----UGCUGcUCCGCGGGA-GCGaGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 22498 | 0.73 | 0.425488 |
Target: 5'- gAGGAGGaaaGGCGGGGCGCUCUgGCagGg -3' miRNA: 3'- -UCUUCUg--CUGCUCCGCGGGAgCGagC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 50597 | 0.75 | 0.314459 |
Target: 5'- uGGAGcgcuGCGACGcGGGCGCCUUCGC-CGg -3' miRNA: 3'- uCUUC----UGCUGC-UCCGCGGGAGCGaGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 112557 | 0.68 | 0.667145 |
Target: 5'- cGAccGGGCGGgcccugcccCGGGGCGCCCgcuuacCGCUCc -3' miRNA: 3'- uCU--UCUGCU---------GCUCCGCGGGa-----GCGAGc -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 18961 | 0.69 | 0.656086 |
Target: 5'- cGGgcGGCGACGAccagcgcggccgcGGCGCCCgcggccgccagCGcCUCGg -3' miRNA: 3'- -UCuuCUGCUGCU-------------CCGCGGGa----------GC-GAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 10096 | 0.69 | 0.626849 |
Target: 5'- cGGGAGcacaaGCGGCGGGGaaagcCGCCUUCGCggCGa -3' miRNA: 3'- -UCUUC-----UGCUGCUCC-----GCGGGAGCGa-GC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 103301 | 0.69 | 0.606694 |
Target: 5'- cGgcGGCGGCGGGGCGgCCgCGCg-- -3' miRNA: 3'- uCuuCUGCUGCUCCGCgGGaGCGagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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