miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 94221 0.77 0.255453
Target:  5'- cGGAGcucGCGGCGGGGCGCCCgCGCggCGc -3'
miRNA:   3'- uCUUC---UGCUGCUCCGCGGGaGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 83767 0.69 0.616766
Target:  5'- uGGGAcacCGGCGAGGCaGCCCUCGaagCGc -3'
miRNA:   3'- -UCUUcu-GCUGCUCCG-CGGGAGCga-GC- -5'
6347 5' -58.3 NC_001847.1 + 6096 0.69 0.606694
Target:  5'- cGGAGGCGcgagacgcccGCGAGGCGCggcgcgagcgCCUCGC-CGc -3'
miRNA:   3'- uCUUCUGC----------UGCUCCGCG----------GGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 20789 0.7 0.566658
Target:  5'- gGGggGcugcagcaucGCGGCGGgugcuucggcGGCGCUUUCGCUCGc -3'
miRNA:   3'- -UCuuC----------UGCUGCU----------CCGCGGGAGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 43093 0.72 0.4797
Target:  5'- ---cGGCGGCgGAGGCGCCCggaggCGC-CGg -3'
miRNA:   3'- ucuuCUGCUG-CUCCGCGGGa----GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 74972 0.69 0.657092
Target:  5'- uGggGACagcgacggGGCGGGGCGCCag-GCUCa -3'
miRNA:   3'- uCuuCUG--------CUGCUCCGCGGgagCGAGc -5'
6347 5' -58.3 NC_001847.1 + 20496 0.69 0.626849
Target:  5'- aGGAAGACGGCucGcGCGUCgUCGCgggCGg -3'
miRNA:   3'- -UCUUCUGCUGcuC-CGCGGgAGCGa--GC- -5'
6347 5' -58.3 NC_001847.1 + 87614 0.73 0.434272
Target:  5'- -uGAGACGGCGGcuuuGGCGCCCgggcugCGCUgGa -3'
miRNA:   3'- ucUUCUGCUGCU----CCGCGGGa-----GCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 79873 0.7 0.585611
Target:  5'- uGAAGGCcACGcgcaaaaAGGCGCCaaugCGCUCGg -3'
miRNA:   3'- uCUUCUGcUGC-------UCCGCGGga--GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 96949 0.7 0.576616
Target:  5'- cGcGGGCGGC-AGGCGCuCUUCGUUCGc -3'
miRNA:   3'- uCuUCUGCUGcUCCGCG-GGAGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 77986 0.74 0.359217
Target:  5'- uGGcGGGCGGCGAGcGCGCCCUgcUGUUUGa -3'
miRNA:   3'- -UCuUCUGCUGCUC-CGCGGGA--GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 132697 0.75 0.321617
Target:  5'- cGggGACGGCGAGGCggcgGCCCU-GC-CGg -3'
miRNA:   3'- uCuuCUGCUGCUCCG----CGGGAgCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 126229 0.68 0.67717
Target:  5'- cGggGucguCGGCGGGGCGUCCggGgUCGu -3'
miRNA:   3'- uCuuCu---GCUGCUCCGCGGGagCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 27523 0.69 0.657092
Target:  5'- cGgcGGCGGCGGGGaCGCCCgagaacggcggCGCggCGg -3'
miRNA:   3'- uCuuCUGCUGCUCC-GCGGGa----------GCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 103301 0.69 0.606694
Target:  5'- cGgcGGCGGCGGGGCGgCCgCGCg-- -3'
miRNA:   3'- uCuuCUGCUGCUCCGCgGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 23723 0.71 0.517652
Target:  5'- cAGAGGuCGAUcAGGCGCUCUUGgUCGu -3'
miRNA:   3'- -UCUUCuGCUGcUCCGCGGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 36703 0.71 0.508045
Target:  5'- cGgcGugGugGAGGCGgCUUCGgUCGc -3'
miRNA:   3'- uCuuCugCugCUCCGCgGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 50597 0.75 0.314459
Target:  5'- uGGAGcgcuGCGACGcGGGCGCCUUCGC-CGg -3'
miRNA:   3'- uCUUC----UGCUGC-UCCGCGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 20262 0.7 0.566658
Target:  5'- gAGAgcgAGACGGCGAggucGGCGCCg-CGCgUCGg -3'
miRNA:   3'- -UCU---UCUGCUGCU----CCGCGGgaGCG-AGC- -5'
6347 5' -58.3 NC_001847.1 + 34279 0.7 0.586612
Target:  5'- ---cGGCGGCuGGGCGCCg-CGCUCGc -3'
miRNA:   3'- ucuuCUGCUGcUCCGCGGgaGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.