Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 94221 | 0.77 | 0.255453 |
Target: 5'- cGGAGcucGCGGCGGGGCGCCCgCGCggCGc -3' miRNA: 3'- uCUUC---UGCUGCUCCGCGGGaGCGa-GC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 32660 | 0.7 | 0.555756 |
Target: 5'- cGAGGugGACGGcgccggcGGCGCgggCC-CGCUCGa -3' miRNA: 3'- uCUUCugCUGCU-------CCGCG---GGaGCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 131817 | 0.7 | 0.556744 |
Target: 5'- cGGAGGcCGGCGccggcggcagcGGCGCCCgcgccgCGCUCGc -3' miRNA: 3'- -UCUUCuGCUGCu----------CCGCGGGa-----GCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 78544 | 0.66 | 0.826801 |
Target: 5'- cGGAAGACG-CGAgucccGGCGCUgcCGUUCGc -3' miRNA: 3'- -UCUUCUGCuGCU-----CCGCGGgaGCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 50597 | 0.75 | 0.314459 |
Target: 5'- uGGAGcgcuGCGACGcGGGCGCCUUCGC-CGg -3' miRNA: 3'- uCUUC----UGCUGC-UCCGCGGGAGCGaGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 132697 | 0.75 | 0.321617 |
Target: 5'- cGggGACGGCGAGGCggcgGCCCU-GC-CGg -3' miRNA: 3'- uCuuCUGCUGCUCCG----CGGGAgCGaGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 22498 | 0.73 | 0.425488 |
Target: 5'- gAGGAGGaaaGGCGGGGCGCUCUgGCagGg -3' miRNA: 3'- -UCUUCUg--CUGCUCCGCGGGAgCGagC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 87614 | 0.73 | 0.434272 |
Target: 5'- -uGAGACGGCGGcuuuGGCGCCCgggcugCGCUgGa -3' miRNA: 3'- ucUUCUGCUGCU----CCGCGGGa-----GCGAgC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 35199 | 0.72 | 0.470423 |
Target: 5'- gAGGAGcgcgcGCGGCuGGGCGCCCUgCGCgCGg -3' miRNA: 3'- -UCUUC-----UGCUGcUCCGCGGGA-GCGaGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 56188 | 0.71 | 0.543933 |
Target: 5'- uGGAAGAaGugGAGGCGCgCUCGguguacccguacgaCUCGu -3' miRNA: 3'- -UCUUCUgCugCUCCGCGgGAGC--------------GAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 36703 | 0.71 | 0.508045 |
Target: 5'- cGgcGugGugGAGGCGgCUUCGgUCGc -3' miRNA: 3'- uCuuCugCugCUCCGCgGGAGCgAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 104956 | 0.72 | 0.461239 |
Target: 5'- cGAAGGCGAgCGccGGGCGCCaggGCUCGg -3' miRNA: 3'- uCUUCUGCU-GC--UCCGCGGgagCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 81815 | 0.76 | 0.274048 |
Target: 5'- cGGAGGCGGCGGGGCGCgCCgucugUCGCcCGc -3' miRNA: 3'- uCUUCUGCUGCUCCGCG-GG-----AGCGaGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 70372 | 0.71 | 0.508045 |
Target: 5'- gAGggGGCGcCGGGGCGCgagCUCGCg-- -3' miRNA: 3'- -UCuuCUGCuGCUCCGCGg--GAGCGagc -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 37190 | 0.76 | 0.293712 |
Target: 5'- cGGGAGAgccCGguGCGAGGCGCCCggugcCGCUUGg -3' miRNA: 3'- -UCUUCU---GC--UGCUCCGCGGGa----GCGAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 30695 | 0.72 | 0.45215 |
Target: 5'- gGGGAGACGA--GGGCaGCCCggCGCUCc -3' miRNA: 3'- -UCUUCUGCUgcUCCG-CGGGa-GCGAGc -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 23723 | 0.71 | 0.517652 |
Target: 5'- cAGAGGuCGAUcAGGCGCUCUUGgUCGu -3' miRNA: 3'- -UCUUCuGCUGcUCCGCGGGAGCgAGC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 53885 | 0.7 | 0.556744 |
Target: 5'- cGggGGCGGCGGGcccccCGUCCUCGCgaCGg -3' miRNA: 3'- uCuuCUGCUGCUCc----GCGGGAGCGa-GC- -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 23957 | 0.75 | 0.300506 |
Target: 5'- uGAAGACgGGCGAGaaGCCCUCGCUg- -3' miRNA: 3'- uCUUCUG-CUGCUCcgCGGGAGCGAgc -5' |
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6347 | 5' | -58.3 | NC_001847.1 | + | 77986 | 0.74 | 0.359217 |
Target: 5'- uGGcGGGCGGCGAGcGCGCCCUgcUGUUUGa -3' miRNA: 3'- -UCuUCUGCUGCUC-CGCGGGA--GCGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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