miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 94221 0.77 0.255453
Target:  5'- cGGAGcucGCGGCGGGGCGCCCgCGCggCGc -3'
miRNA:   3'- uCUUC---UGCUGCUCCGCGGGaGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 32660 0.7 0.555756
Target:  5'- cGAGGugGACGGcgccggcGGCGCgggCC-CGCUCGa -3'
miRNA:   3'- uCUUCugCUGCU-------CCGCG---GGaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 131817 0.7 0.556744
Target:  5'- cGGAGGcCGGCGccggcggcagcGGCGCCCgcgccgCGCUCGc -3'
miRNA:   3'- -UCUUCuGCUGCu----------CCGCGGGa-----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 78544 0.66 0.826801
Target:  5'- cGGAAGACG-CGAgucccGGCGCUgcCGUUCGc -3'
miRNA:   3'- -UCUUCUGCuGCU-----CCGCGGgaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 50597 0.75 0.314459
Target:  5'- uGGAGcgcuGCGACGcGGGCGCCUUCGC-CGg -3'
miRNA:   3'- uCUUC----UGCUGC-UCCGCGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 132697 0.75 0.321617
Target:  5'- cGggGACGGCGAGGCggcgGCCCU-GC-CGg -3'
miRNA:   3'- uCuuCUGCUGCUCCG----CGGGAgCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 22498 0.73 0.425488
Target:  5'- gAGGAGGaaaGGCGGGGCGCUCUgGCagGg -3'
miRNA:   3'- -UCUUCUg--CUGCUCCGCGGGAgCGagC- -5'
6347 5' -58.3 NC_001847.1 + 87614 0.73 0.434272
Target:  5'- -uGAGACGGCGGcuuuGGCGCCCgggcugCGCUgGa -3'
miRNA:   3'- ucUUCUGCUGCU----CCGCGGGa-----GCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 35199 0.72 0.470423
Target:  5'- gAGGAGcgcgcGCGGCuGGGCGCCCUgCGCgCGg -3'
miRNA:   3'- -UCUUC-----UGCUGcUCCGCGGGA-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 56188 0.71 0.543933
Target:  5'- uGGAAGAaGugGAGGCGCgCUCGguguacccguacgaCUCGu -3'
miRNA:   3'- -UCUUCUgCugCUCCGCGgGAGC--------------GAGC- -5'
6347 5' -58.3 NC_001847.1 + 36703 0.71 0.508045
Target:  5'- cGgcGugGugGAGGCGgCUUCGgUCGc -3'
miRNA:   3'- uCuuCugCugCUCCGCgGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 104956 0.72 0.461239
Target:  5'- cGAAGGCGAgCGccGGGCGCCaggGCUCGg -3'
miRNA:   3'- uCUUCUGCU-GC--UCCGCGGgagCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 81815 0.76 0.274048
Target:  5'- cGGAGGCGGCGGGGCGCgCCgucugUCGCcCGc -3'
miRNA:   3'- uCUUCUGCUGCUCCGCG-GG-----AGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 70372 0.71 0.508045
Target:  5'- gAGggGGCGcCGGGGCGCgagCUCGCg-- -3'
miRNA:   3'- -UCuuCUGCuGCUCCGCGg--GAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 37190 0.76 0.293712
Target:  5'- cGGGAGAgccCGguGCGAGGCGCCCggugcCGCUUGg -3'
miRNA:   3'- -UCUUCU---GC--UGCUCCGCGGGa----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 30695 0.72 0.45215
Target:  5'- gGGGAGACGA--GGGCaGCCCggCGCUCc -3'
miRNA:   3'- -UCUUCUGCUgcUCCG-CGGGa-GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 23723 0.71 0.517652
Target:  5'- cAGAGGuCGAUcAGGCGCUCUUGgUCGu -3'
miRNA:   3'- -UCUUCuGCUGcUCCGCGGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 53885 0.7 0.556744
Target:  5'- cGggGGCGGCGGGcccccCGUCCUCGCgaCGg -3'
miRNA:   3'- uCuuCUGCUGCUCc----GCGGGAGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 23957 0.75 0.300506
Target:  5'- uGAAGACgGGCGAGaaGCCCUCGCUg- -3'
miRNA:   3'- uCUUCUG-CUGCUCcgCGGGAGCGAgc -5'
6347 5' -58.3 NC_001847.1 + 77986 0.74 0.359217
Target:  5'- uGGcGGGCGGCGAGcGCGCCCUgcUGUUUGa -3'
miRNA:   3'- -UCuUCUGCUGCUC-CGCGGGA--GCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.