miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 488 0.69 0.606694
Target:  5'- cGgcGGCGGCGGGGCGgCCgCGCg-- -3'
miRNA:   3'- uCuuCUGCUGCUCCGCgGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 578 0.66 0.801081
Target:  5'- uGgcGGCGACGAGGCcGUCUUUGUg-- -3'
miRNA:   3'- uCuuCUGCUGCUCCG-CGGGAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 1556 0.67 0.773103
Target:  5'- cGAAGACGcgccGCGAGGCcagcacggcgcgcGCCagcgcgcCGCUCGg -3'
miRNA:   3'- uCUUCUGC----UGCUCCG-------------CGGga-----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 2075 0.66 0.826801
Target:  5'- cGguGGCGGCGA-GCGCCC-CGCg-- -3'
miRNA:   3'- uCuuCUGCUGCUcCGCGGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 2143 0.72 0.461239
Target:  5'- cGAAGGCGAgCGccGGGCGCCaggGCUCGg -3'
miRNA:   3'- uCUUCUGCU-GC--UCCGCGGgagCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 2387 0.67 0.774025
Target:  5'- cGAAGACGGCGGugacGCGCUCggccgugGCUCGc -3'
miRNA:   3'- uCUUCUGCUGCUc---CGCGGGag-----CGAGC- -5'
6347 5' -58.3 NC_001847.1 + 2499 0.68 0.67717
Target:  5'- uGAAGACGucGCGAGGgcCGCCUcgCGCUUu -3'
miRNA:   3'- uCUUCUGC--UGCUCC--GCGGGa-GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 4871 0.66 0.826801
Target:  5'- gGGggGGCGGCG-GGCagcggcaggGCCCcCGCg-- -3'
miRNA:   3'- -UCuuCUGCUGCuCCG---------CGGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 6096 0.69 0.606694
Target:  5'- cGGAGGCGcgagacgcccGCGAGGCGCggcgcgagcgCCUCGC-CGc -3'
miRNA:   3'- uCUUCUGC----------UGCUCCGCG----------GGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 8460 0.66 0.801081
Target:  5'- cGGAGGCGGCGccGgGCCgggggcggCGCUCGg -3'
miRNA:   3'- uCUUCUGCUGCucCgCGGga------GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 8826 0.66 0.826801
Target:  5'- aAGGAGAgauccCGACGGGGCuGUuucaUCUCGCUUu -3'
miRNA:   3'- -UCUUCU-----GCUGCUCCG-CG----GGAGCGAGc -5'
6347 5' -58.3 NC_001847.1 + 9744 0.68 0.667145
Target:  5'- cGAccGGGCGGgcccugcccCGGGGCGCCCgcuuacCGCUCc -3'
miRNA:   3'- uCU--UCUGCU---------GCUCCGCGGGa-----GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 9971 0.68 0.667145
Target:  5'- cGAGGACuGGgcccCGAGGCGCugcgCCUCGCcaUCGa -3'
miRNA:   3'- uCUUCUG-CU----GCUCCGCG----GGAGCG--AGC- -5'
6347 5' -58.3 NC_001847.1 + 10096 0.69 0.626849
Target:  5'- cGGGAGcacaaGCGGCGGGGaaagcCGCCUUCGCggCGa -3'
miRNA:   3'- -UCUUC-----UGCUGCUCC-----GCGGGAGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 10349 0.66 0.783178
Target:  5'- gAGAAcGGCGGCGAGGgGgCCgcCGC-CGa -3'
miRNA:   3'- -UCUU-CUGCUGCUCCgCgGGa-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 10862 0.66 0.801081
Target:  5'- cGAGGcGCGGCGggcgcGGGCGCCCagGCa-- -3'
miRNA:   3'- uCUUC-UGCUGC-----UCCGCGGGagCGagc -5'
6347 5' -58.3 NC_001847.1 + 12571 0.69 0.606694
Target:  5'- cGGgcGccGCGuACGcGGCGCCCUCGCacUCGu -3'
miRNA:   3'- -UCuuC--UGC-UGCuCCGCGGGAGCG--AGC- -5'
6347 5' -58.3 NC_001847.1 + 13338 0.72 0.489065
Target:  5'- --cGGGCGGCGAgcaGGCGCCCgcgaggaCGCUCc -3'
miRNA:   3'- ucuUCUGCUGCU---CCGCGGGa------GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 14938 0.67 0.755358
Target:  5'- -cAAGGCuGCGAgcgGGCGCCgCUCGCgCGg -3'
miRNA:   3'- ucUUCUGcUGCU---CCGCGG-GAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 15828 0.66 0.81839
Target:  5'- cGAAGGCGaggGCGAauucGCGCCUUUGCccUCGg -3'
miRNA:   3'- uCUUCUGC---UGCUc---CGCGGGAGCG--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.