Results 1 - 20 of 195 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 78544 | 0.66 | 0.826801 |
Target: 5'- cGGAAGACG-CGAgucccGGCGCUgcCGUUCGc -3' miRNA: 3'- -UCUUCUGCuGCU-----CCGCGGgaGCGAGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 94494 | 0.66 | 0.809814 |
Target: 5'- cAGAAGGCcGCGAGGCGCgg-CGgaCGu -3' miRNA: 3'- -UCUUCUGcUGCUCCGCGggaGCgaGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 68793 | 0.66 | 0.809814 |
Target: 5'- cGggGACGAucgccaCGGcGGCGCCCgCGCc-- -3' miRNA: 3'- uCuuCUGCU------GCU-CCGCGGGaGCGagc -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 85154 | 0.66 | 0.809814 |
Target: 5'- ---cGGCGGCaacacGGCGCCCUCGUggcucUCGu -3' miRNA: 3'- ucuuCUGCUGcu---CCGCGGGAGCG-----AGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 49246 | 0.66 | 0.801081 |
Target: 5'- ---cGGCGGgGuGGCGCCggcgaacgcgCUCGCUCa -3' miRNA: 3'- ucuuCUGCUgCuCCGCGG----------GAGCGAGc -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 44045 | 0.66 | 0.801081 |
Target: 5'- cGAGGcgcGCGuCGGGGcCGCCCU-GUUCGu -3' miRNA: 3'- uCUUC---UGCuGCUCC-GCGGGAgCGAGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 8460 | 0.66 | 0.801081 |
Target: 5'- cGGAGGCGGCGccGgGCCgggggcggCGCUCGg -3' miRNA: 3'- uCUUCUGCUGCucCgCGGga------GCGAGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 92866 | 0.66 | 0.7922 |
Target: 5'- ---cGAgGACGuGGCGCCgCgcgaGCUCGa -3' miRNA: 3'- ucuuCUgCUGCuCCGCGG-Gag--CGAGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 122015 | 0.66 | 0.7922 |
Target: 5'- cGGcAGGCGGCGcGGCGCCgCcCGCgCGc -3' miRNA: 3'- -UCuUCUGCUGCuCCGCGG-GaGCGaGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 111178 | 0.66 | 0.809814 |
Target: 5'- cGGAGGGCaGCGAGG-GCUuCUCGCcCGu -3' miRNA: 3'- -UCUUCUGcUGCUCCgCGG-GAGCGaGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 79756 | 0.66 | 0.809814 |
Target: 5'- cGuAGAUGACGAcGCuGUCCUCGC-CGa -3' miRNA: 3'- uCuUCUGCUGCUcCG-CGGGAGCGaGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 110817 | 0.66 | 0.809814 |
Target: 5'- ----cGCGGCGuGGCGCgCCacCGCUCGc -3' miRNA: 3'- ucuucUGCUGCuCCGCG-GGa-GCGAGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 46530 | 0.66 | 0.826801 |
Target: 5'- cGGggGGCGGCGGcGGCGCg--CGCg-- -3' miRNA: 3'- -UCuuCUGCUGCU-CCGCGggaGCGagc -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 31476 | 0.66 | 0.826801 |
Target: 5'- ----cGCGugGAGGUGCUCUC-CUCc -3' miRNA: 3'- ucuucUGCugCUCCGCGGGAGcGAGc -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 4871 | 0.66 | 0.826801 |
Target: 5'- gGGggGGCGGCG-GGCagcggcaggGCCCcCGCg-- -3' miRNA: 3'- -UCuuCUGCUGCuCCG---------CGGGaGCGagc -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 2075 | 0.66 | 0.826801 |
Target: 5'- cGguGGCGGCGA-GCGCCC-CGCg-- -3' miRNA: 3'- uCuuCUGCUGCUcCGCGGGaGCGagc -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 99567 | 0.66 | 0.826801 |
Target: 5'- uGAGGuuGGCcagcccGGCGCCCUCGUcgCGg -3' miRNA: 3'- uCUUCugCUGcu----CCGCGGGAGCGa-GC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 79599 | 0.66 | 0.826801 |
Target: 5'- cGggGGCGcCgGGGGCGUUgUCGC-CGg -3' miRNA: 3'- uCuuCUGCuG-CUCCGCGGgAGCGaGC- -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 104445 | 0.66 | 0.81839 |
Target: 5'- cAGGAG-CGcCG-GGCuGCCCUCGuCUCc -3' miRNA: 3'- -UCUUCuGCuGCuCCG-CGGGAGC-GAGc -5' |
|||||||
6347 | 5' | -58.3 | NC_001847.1 | + | 129258 | 0.66 | 0.81839 |
Target: 5'- ---cGACGGCGcGGcCGCCCUgCGCgcagCGc -3' miRNA: 3'- ucuuCUGCUGCuCC-GCGGGA-GCGa---GC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home