miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 134908 0.68 0.716827
Target:  5'- --cGGGCGuCGGGGCgcgagGCCCggGCUCGg -3'
miRNA:   3'- ucuUCUGCuGCUCCG-----CGGGagCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 134847 0.68 0.67717
Target:  5'- cGggGcGCGGgGAcGGCGCCCgcgcggGCUCGg -3'
miRNA:   3'- uCuuC-UGCUgCU-CCGCGGGag----CGAGC- -5'
6347 5' -58.3 NC_001847.1 + 134362 0.67 0.745862
Target:  5'- cGGAcGACGACGAGGCcgGCgC-CGC-CGg -3'
miRNA:   3'- -UCUuCUGCUGCUCCG--CGgGaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 134289 0.66 0.826801
Target:  5'- ----cGCGugGAGGUGCUCUC-CUCc -3'
miRNA:   3'- ucuucUGCugCUCCGCGGGAGcGAGc -5'
6347 5' -58.3 NC_001847.1 + 134002 0.66 0.7922
Target:  5'- cGGAGccgcGCGcCGAGGCGCCgC-CGCUgGu -3'
miRNA:   3'- uCUUC----UGCuGCUCCGCGG-GaGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 133182 0.68 0.667145
Target:  5'- cGcGGGCG-CG-GGCuGCCCUCGCUgGa -3'
miRNA:   3'- uCuUCUGCuGCuCCG-CGGGAGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 132746 0.66 0.809814
Target:  5'- gGGAGGACGAcucugggcCGAGGCGCCggCGa--- -3'
miRNA:   3'- -UCUUCUGCU--------GCUCCGCGGgaGCgagc -5'
6347 5' -58.3 NC_001847.1 + 132697 0.75 0.321617
Target:  5'- cGggGACGGCGAGGCggcgGCCCU-GC-CGg -3'
miRNA:   3'- uCuuCUGCUGCUCCG----CGGGAgCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 132672 0.69 0.636937
Target:  5'- ---cGGCGGCgGGGGCGCCgCcgccCGCUCGa -3'
miRNA:   3'- ucuuCUGCUG-CUCCGCGG-Ga---GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 132639 0.67 0.745862
Target:  5'- -aAAG-CG-CGAGGCgGCCCUCGCg-- -3'
miRNA:   3'- ucUUCuGCuGCUCCG-CGGGAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 132571 0.66 0.783178
Target:  5'- cGgcGGCcGCGcAGGCGCCCgCGC-CGa -3'
miRNA:   3'- uCuuCUGcUGC-UCCGCGGGaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 132386 1.08 0.002117
Target:  5'- aAGAAGACGACGAGGCGCCCUCGCUCGc -3'
miRNA:   3'- -UCUUCUGCUGCUCCGCGGGAGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 132330 0.66 0.783178
Target:  5'- cGGAGGugcCGGCGcggcuGGCGgCCgCGCUCGc -3'
miRNA:   3'- -UCUUCu--GCUGCu----CCGCgGGaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 131817 0.7 0.556744
Target:  5'- cGGAGGcCGGCGccggcggcagcGGCGCCCgcgccgCGCUCGc -3'
miRNA:   3'- -UCUUCuGCUGCu----------CCGCGGGa-----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 130906 0.68 0.67717
Target:  5'- cGGggGGCGGC--GGUGCCCUCGg--- -3'
miRNA:   3'- -UCuuCUGCUGcuCCGCGGGAGCgagc -5'
6347 5' -58.3 NC_001847.1 + 130649 0.68 0.706997
Target:  5'- cGGAGAuCGGCGAGGaCGCCggCGC-Ca -3'
miRNA:   3'- uCUUCU-GCUGCUCC-GCGGgaGCGaGc -5'
6347 5' -58.3 NC_001847.1 + 130544 0.67 0.755358
Target:  5'- ---cGACGACGuGGcCGCCUUCG-UCGc -3'
miRNA:   3'- ucuuCUGCUGCuCC-GCGGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 130113 0.77 0.255453
Target:  5'- -uGGGACGAguaCGAGaGCGCCCUCGCgcgCGa -3'
miRNA:   3'- ucUUCUGCU---GCUC-CGCGGGAGCGa--GC- -5'
6347 5' -58.3 NC_001847.1 + 129258 0.66 0.81839
Target:  5'- ---cGACGGCGcGGcCGCCCUgCGCgcagCGc -3'
miRNA:   3'- ucuuCUGCUGCuCC-GCGGGA-GCGa---GC- -5'
6347 5' -58.3 NC_001847.1 + 129021 0.75 0.300506
Target:  5'- cGAuGGCGGCGAGGCGCucgcgccgcgCCUCGCgggCGu -3'
miRNA:   3'- uCUuCUGCUGCUCCGCG----------GGAGCGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.