miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 126229 0.68 0.67717
Target:  5'- cGggGucguCGGCGGGGCGUCCggGgUCGu -3'
miRNA:   3'- uCuuCu---GCUGCUCCGCGGGagCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 125485 0.72 0.44316
Target:  5'- cGGcGGGCG-CGAGGaCGCCCggcUGCUCGa -3'
miRNA:   3'- -UCuUCUGCuGCUCC-GCGGGa--GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 125157 0.7 0.576616
Target:  5'- cGucGAUGGCGAGGCGCag-CGcCUCGg -3'
miRNA:   3'- uCuuCUGCUGCUCCGCGggaGC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 124924 0.66 0.783178
Target:  5'- cGggGGCGacaGCGGGcGCGCCCUgGgCcCGg -3'
miRNA:   3'- uCuuCUGC---UGCUC-CGCGGGAgC-GaGC- -5'
6347 5' -58.3 NC_001847.1 + 124781 0.67 0.774025
Target:  5'- gGGggGcuuuCGGCGGcGGCcCCCUCGC-CGc -3'
miRNA:   3'- -UCuuCu---GCUGCU-CCGcGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 124399 0.66 0.7922
Target:  5'- gAGggGGCcGCGGGGCcccGCCCcccuaaacUCGCUgGc -3'
miRNA:   3'- -UCuuCUGcUGCUCCG---CGGG--------AGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 123168 0.67 0.726588
Target:  5'- cGGAGACGGCGcggcGGCGCUCagGC-CGc -3'
miRNA:   3'- uCUUCUGCUGCu---CCGCGGGagCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 122572 0.67 0.774025
Target:  5'- cGAGGGCGccgcguACGcGGCGCCCguugCGCa-- -3'
miRNA:   3'- uCUUCUGC------UGCuCCGCGGGa---GCGagc -5'
6347 5' -58.3 NC_001847.1 + 122015 0.66 0.7922
Target:  5'- cGGcAGGCGGCGcGGCGCCgCcCGCgCGc -3'
miRNA:   3'- -UCuUCUGCUGCuCCGCGG-GaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 118661 0.72 0.4797
Target:  5'- cGGGAGGCGcaagaGAGGUGUCCgCGCUCu -3'
miRNA:   3'- -UCUUCUGCug---CUCCGCGGGaGCGAGc -5'
6347 5' -58.3 NC_001847.1 + 118123 0.71 0.508045
Target:  5'- cGAGGGCGGCGAGGCcGUCUgcgaggcgCGCUgCGu -3'
miRNA:   3'- uCUUCUGCUGCUCCG-CGGGa-------GCGA-GC- -5'
6347 5' -58.3 NC_001847.1 + 116618 0.7 0.59664
Target:  5'- cGcGGACGGCGGcGCGCCCgcagCGCUgGc -3'
miRNA:   3'- uCuUCUGCUGCUcCGCGGGa---GCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 115232 0.66 0.783178
Target:  5'- aGGucGGCGGCGA--CGCCCUCGUgCGc -3'
miRNA:   3'- -UCuuCUGCUGCUccGCGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 113162 0.66 0.783178
Target:  5'- gAGAAcGGCGGCGAGGgGgCCgcCGC-CGa -3'
miRNA:   3'- -UCUU-CUGCUGCUCCgCgGGa-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 112783 0.68 0.697104
Target:  5'- cGAGGACuGGCgccccGAGGCGCugcgCCUCGCcaUCGa -3'
miRNA:   3'- uCUUCUG-CUG-----CUCCGCG----GGAGCG--AGC- -5'
6347 5' -58.3 NC_001847.1 + 112557 0.68 0.667145
Target:  5'- cGAccGGGCGGgcccugcccCGGGGCGCCCgcuuacCGCUCc -3'
miRNA:   3'- uCU--UCUGCU---------GCUCCGCGGGa-----GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 111273 0.66 0.801081
Target:  5'- cGGAGGCGGCGccGgGCCgggggcggCGCUCGg -3'
miRNA:   3'- uCUUCUGCUGCucCgCGGga------GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 111178 0.66 0.809814
Target:  5'- cGGAGGGCaGCGAGG-GCUuCUCGCcCGu -3'
miRNA:   3'- -UCUUCUGcUGCUCCgCGG-GAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 110817 0.66 0.809814
Target:  5'- ----cGCGGCGuGGCGCgCCacCGCUCGc -3'
miRNA:   3'- ucuucUGCUGCuCCGCG-GGa-GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 109822 0.69 0.64702
Target:  5'- cGGGAGcCGGCcuuuGGGcGCGCCCUCG-UCGg -3'
miRNA:   3'- -UCUUCuGCUG----CUC-CGCGGGAGCgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.