miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 27886 0.69 0.64702
Target:  5'- cGGuuGGAUGGCGAGGUcgccgGCCCggccgCGCUUGc -3'
miRNA:   3'- -UCu-UCUGCUGCUCCG-----CGGGa----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 32660 0.7 0.555756
Target:  5'- cGAGGugGACGGcgccggcGGCGCgggCC-CGCUCGa -3'
miRNA:   3'- uCUUCugCUGCU-------CCGCG---GGaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 37190 0.76 0.293712
Target:  5'- cGGGAGAgccCGguGCGAGGCGCCCggugcCGCUUGg -3'
miRNA:   3'- -UCUUCU---GC--UGCUCCGCGGGa----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 20496 0.69 0.626849
Target:  5'- aGGAAGACGGCucGcGCGUCgUCGCgggCGg -3'
miRNA:   3'- -UCUUCUGCUGcuC-CGCGGgAGCGa--GC- -5'
6347 5' -58.3 NC_001847.1 + 81815 0.76 0.274048
Target:  5'- cGGAGGCGGCGGGGCGCgCCgucugUCGCcCGc -3'
miRNA:   3'- uCUUCUGCUGCUCCGCG-GG-----AGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 86521 0.67 0.736269
Target:  5'- ---cGGCGGCuGGGCGCCCgcgUGCUgGc -3'
miRNA:   3'- ucuuCUGCUGcUCCGCGGGa--GCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 50597 0.75 0.314459
Target:  5'- uGGAGcgcuGCGACGcGGGCGCCUUCGC-CGg -3'
miRNA:   3'- uCUUC----UGCUGC-UCCGCGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 92591 0.68 0.716827
Target:  5'- aGGAGGACG-CGGccGCGUCCUCGCccUCa -3'
miRNA:   3'- -UCUUCUGCuGCUc-CGCGGGAGCG--AGc -5'
6347 5' -58.3 NC_001847.1 + 130649 0.68 0.706997
Target:  5'- cGGAGAuCGGCGAGGaCGCCggCGC-Ca -3'
miRNA:   3'- uCUUCU-GCUGCUCC-GCGGgaGCGaGc -5'
6347 5' -58.3 NC_001847.1 + 130906 0.68 0.67717
Target:  5'- cGGggGGCGGC--GGUGCCCUCGg--- -3'
miRNA:   3'- -UCuuCUGCUGcuCCGCGGGAGCgagc -5'
6347 5' -58.3 NC_001847.1 + 2499 0.68 0.67717
Target:  5'- uGAAGACGucGCGAGGgcCGCCUcgCGCUUu -3'
miRNA:   3'- uCUUCUGC--UGCUCC--GCGGGa-GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 112557 0.68 0.667145
Target:  5'- cGAccGGGCGGgcccugcccCGGGGCGCCCgcuuacCGCUCc -3'
miRNA:   3'- uCU--UCUGCU---------GCUCCGCGGGa-----GCGAGc -5'
6347 5' -58.3 NC_001847.1 + 18961 0.69 0.656086
Target:  5'- cGGgcGGCGACGAccagcgcggccgcGGCGCCCgcggccgccagCGcCUCGg -3'
miRNA:   3'- -UCuuCUGCUGCU-------------CCGCGGGa----------GC-GAGC- -5'
6347 5' -58.3 NC_001847.1 + 6096 0.69 0.606694
Target:  5'- cGGAGGCGcgagacgcccGCGAGGCGCggcgcgagcgCCUCGC-CGc -3'
miRNA:   3'- uCUUCUGC----------UGCUCCGCG----------GGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 82821 0.7 0.59664
Target:  5'- cGAAGGCGACGGcGCGaCCCggUCGUUUGc -3'
miRNA:   3'- uCUUCUGCUGCUcCGC-GGG--AGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 96949 0.7 0.576616
Target:  5'- cGcGGGCGGC-AGGCGCuCUUCGUUCGc -3'
miRNA:   3'- uCuUCUGCUGcUCCGCG-GGAGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 131817 0.7 0.556744
Target:  5'- cGGAGGcCGGCGccggcggcagcGGCGCCCgcgccgCGCUCGc -3'
miRNA:   3'- -UCUUCuGCUGCu----------CCGCGGGa-----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 70372 0.71 0.508045
Target:  5'- gAGggGGCGcCGGGGCGCgagCUCGCg-- -3'
miRNA:   3'- -UCuuCUGCuGCUCCGCGg--GAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 35199 0.72 0.470423
Target:  5'- gAGGAGcgcgcGCGGCuGGGCGCCCUgCGCgCGg -3'
miRNA:   3'- -UCUUC-----UGCUGcUCCGCGGGA-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 22498 0.73 0.425488
Target:  5'- gAGGAGGaaaGGCGGGGCGCUCUgGCagGg -3'
miRNA:   3'- -UCUUCUg--CUGCUCCGCGGGAgCGagC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.