miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 132571 0.66 0.783178
Target:  5'- cGgcGGCcGCGcAGGCGCCCgCGC-CGa -3'
miRNA:   3'- uCuuCUGcUGC-UCCGCGGGaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 22111 0.66 0.783178
Target:  5'- cGggGGCGacaGCGGGcGCGCCCUgGgCcCGg -3'
miRNA:   3'- uCuuCUGC---UGCUC-CGCGGGAgC-GaGC- -5'
6347 5' -58.3 NC_001847.1 + 21968 0.67 0.774025
Target:  5'- gGGggGcuuuCGGCGGcGGCcCCCUCGC-CGc -3'
miRNA:   3'- -UCuuCu---GCUGCU-CCGcGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 103170 0.67 0.774025
Target:  5'- cGAGGGCGGCGuccacGGgGCCCgccgcCGCcgCGg -3'
miRNA:   3'- uCUUCUGCUGCu----CCgCGGGa----GCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 122572 0.67 0.774025
Target:  5'- cGAGGGCGccgcguACGcGGCGCCCguugCGCa-- -3'
miRNA:   3'- uCUUCUGC------UGCuCCGCGGGa---GCGagc -5'
6347 5' -58.3 NC_001847.1 + 42555 0.67 0.774025
Target:  5'- cGAGGACG-CGGccGCGUCCUC-CUCGg -3'
miRNA:   3'- uCUUCUGCuGCUc-CGCGGGAGcGAGC- -5'
6347 5' -58.3 NC_001847.1 + 2387 0.67 0.774025
Target:  5'- cGAAGACGGCGGugacGCGCUCggccgugGCUCGc -3'
miRNA:   3'- uCUUCUGCUGCUc---CGCGGGag-----CGAGC- -5'
6347 5' -58.3 NC_001847.1 + 65877 0.67 0.774025
Target:  5'- gAGcuGACGugGGGGcCGCCCaugCGC-Ca -3'
miRNA:   3'- -UCuuCUGCugCUCC-GCGGGa--GCGaGc -5'
6347 5' -58.3 NC_001847.1 + 124781 0.67 0.774025
Target:  5'- gGGggGcuuuCGGCGGcGGCcCCCUCGC-CGc -3'
miRNA:   3'- -UCuuCu---GCUGCU-CCGcGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 104369 0.67 0.773103
Target:  5'- cGAAGACGcgccGCGAGGCcagcacggcgcgcGCCagcgcgcCGCUCGg -3'
miRNA:   3'- uCUUCUGC----UGCUCCG-------------CGGga-----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 1556 0.67 0.773103
Target:  5'- cGAAGACGcgccGCGAGGCcagcacggcgcgcGCCagcgcgcCGCUCGg -3'
miRNA:   3'- uCUUCUGC----UGCUCCG-------------CGGga-----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 23779 0.67 0.764749
Target:  5'- cGGAugcccGGGCG-CGAGGuCGCCCagCGCggCGg -3'
miRNA:   3'- -UCU-----UCUGCuGCUCC-GCGGGa-GCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 59174 0.67 0.764749
Target:  5'- cAGggGGCGGCGgucgaGGGgGCCgUCGUa-- -3'
miRNA:   3'- -UCuuCUGCUGC-----UCCgCGGgAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 86351 0.67 0.764749
Target:  5'- uGgcGcCGGCGAGGCGCCCgcagaCGaggCGg -3'
miRNA:   3'- uCuuCuGCUGCUCCGCGGGa----GCga-GC- -5'
6347 5' -58.3 NC_001847.1 + 27929 0.67 0.759128
Target:  5'- cGGAGGACG-CGGacaggccugggccgcGGCGCgCgCGCUCGc -3'
miRNA:   3'- -UCUUCUGCuGCU---------------CCGCGgGaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 130544 0.67 0.755358
Target:  5'- ---cGACGACGuGGcCGCCUUCG-UCGc -3'
miRNA:   3'- ucuuCUGCUGCuCC-GCGGGAGCgAGC- -5'
6347 5' -58.3 NC_001847.1 + 14938 0.67 0.755358
Target:  5'- -cAAGGCuGCGAgcgGGCGCCgCUCGCgCGg -3'
miRNA:   3'- ucUUCUGcUGCU---CCGCGG-GAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 58783 0.67 0.755358
Target:  5'- -aGAGGCGAcCGGGGUccgccccggcgGCCCguaggcagUCGCUCGa -3'
miRNA:   3'- ucUUCUGCU-GCUCCG-----------CGGG--------AGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 134362 0.67 0.745862
Target:  5'- cGGAcGACGACGAGGCcgGCgC-CGC-CGg -3'
miRNA:   3'- -UCUuCUGCUGCUCCG--CGgGaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 25285 0.67 0.745862
Target:  5'- uGAAcaccGCGcaccACGuGGCGCCCUCGC-CGa -3'
miRNA:   3'- uCUUc---UGC----UGCuCCGCGGGAGCGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.