miRNA display CGI


Results 61 - 80 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 13448 0.73 0.585216
Target:  5'- gGCUGUAuCUaGCGGGCGCGcACCUGCu- -3'
miRNA:   3'- aCGACGU-GA-UGCUCGUGU-UGGACGcg -5'
6348 3' -54.2 NC_001847.1 + 13535 0.72 0.648424
Target:  5'- gGCUGcCGCUAgGcAGCGCGACgCUGCa- -3'
miRNA:   3'- aCGAC-GUGAUgC-UCGUGUUG-GACGcg -5'
6348 3' -54.2 NC_001847.1 + 13786 0.69 0.825723
Target:  5'- cUGCUGCugaACUGCGuagccGGCGCAgcgguguacggggGCCgGCGUg -3'
miRNA:   3'- -ACGACG---UGAUGC-----UCGUGU-------------UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 13843 0.72 0.658961
Target:  5'- cGCgaggGCACgcucGCGcGGUACAGCCUGCuaGCg -3'
miRNA:   3'- aCGa---CGUGa---UGC-UCGUGUUGGACG--CG- -5'
6348 3' -54.2 NC_001847.1 + 14038 0.67 0.903137
Target:  5'- cGCUGguCggccGCGAGCcgcuagguucGCGGCCgGUGCu -3'
miRNA:   3'- aCGACguGa---UGCUCG----------UGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 14151 0.71 0.700786
Target:  5'- gGCUGCGCaGCGgcGGCcgggGCGGCC-GCGCu -3'
miRNA:   3'- aCGACGUGaUGC--UCG----UGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 14351 0.66 0.915613
Target:  5'- gGCgGCGcCUGCGGGgaaCGCcGCCaGCGCg -3'
miRNA:   3'- aCGaCGU-GAUGCUC---GUGuUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 14436 0.71 0.711114
Target:  5'- cGCUGUuugGCgcCGAGCGCGcgGCC-GCGCu -3'
miRNA:   3'- aCGACG---UGauGCUCGUGU--UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 14563 0.68 0.870722
Target:  5'- cGCaGCGCgggugcugGCGGGCGCGcggcucucuaaggacGCCgucugGCGCg -3'
miRNA:   3'- aCGaCGUGa-------UGCUCGUGU---------------UGGa----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 14654 0.72 0.627317
Target:  5'- aGCgGCGCUgACGugaacaucgacGGCGCGGCCggcgGCGCg -3'
miRNA:   3'- aCGaCGUGA-UGC-----------UCGUGUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 14655 0.69 0.799634
Target:  5'- cGCU-CGCUGCGAGCGgGGCgCgugucgGCGUg -3'
miRNA:   3'- aCGAcGUGAUGCUCGUgUUG-Ga-----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 14809 0.71 0.690398
Target:  5'- aGCgGCggaGCUGCGcGGCGC--CCUGCGCg -3'
miRNA:   3'- aCGaCG---UGAUGC-UCGUGuuGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 14941 0.75 0.493237
Target:  5'- gGCUGCGa-GCGGGCGCcGCUcGCGCg -3'
miRNA:   3'- aCGACGUgaUGCUCGUGuUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 14949 0.69 0.823972
Target:  5'- gGCUGCugUGguucauggacgccuCGAugGCACgGugCUGCGCa -3'
miRNA:   3'- aCGACGugAU--------------GCU--CGUG-UugGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 15046 0.71 0.690398
Target:  5'- gGCgaGCugUGCGAGCGCcaucuGACCgGCGg -3'
miRNA:   3'- aCGa-CGugAUGCUCGUG-----UUGGaCGCg -5'
6348 3' -54.2 NC_001847.1 + 15302 0.73 0.595707
Target:  5'- gGCUGCGCgcggGCGuGCGCGACCcGUa- -3'
miRNA:   3'- aCGACGUGa---UGCuCGUGUUGGaCGcg -5'
6348 3' -54.2 NC_001847.1 + 15424 0.69 0.780839
Target:  5'- cGCgGCACgGCGAGCugGuuuaaGCUgGCGCu -3'
miRNA:   3'- aCGaCGUGaUGCUCGugU-----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 15541 0.67 0.882569
Target:  5'- cUGCUGgCGCcggUGCGcGCGCGGCCgucggGcCGCg -3'
miRNA:   3'- -ACGAC-GUG---AUGCuCGUGUUGGa----C-GCG- -5'
6348 3' -54.2 NC_001847.1 + 16324 0.68 0.859877
Target:  5'- gGCUccGCGCccuagACGAccgGCACGGCCUggagGCGCu -3'
miRNA:   3'- aCGA--CGUGa----UGCU---CGUGUUGGA----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 16690 0.77 0.373797
Target:  5'- gGCUGCGCggGCGAGC-CGGCagGCGCa -3'
miRNA:   3'- aCGACGUGa-UGCUCGuGUUGgaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.