miRNA display CGI


Results 41 - 60 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 9599 0.66 0.937528
Target:  5'- aGCcGCAgCcGCGGGgACGACCguagcUGCGCc -3'
miRNA:   3'- aCGaCGU-GaUGCUCgUGUUGG-----ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 10127 0.67 0.882569
Target:  5'- cGCgGCGa-GCGGGCcCGGCCguaGCGCg -3'
miRNA:   3'- aCGaCGUgaUGCUCGuGUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 10148 0.68 0.843645
Target:  5'- cUGCUGCAgCUcucgccCGAGCAggcCGGCCcgcUGCGCc -3'
miRNA:   3'- -ACGACGU-GAu-----GCUCGU---GUUGG---ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 10694 0.71 0.679957
Target:  5'- gGUcGCGCc-CGGGCGCGGCCcGCGCc -3'
miRNA:   3'- aCGaCGUGauGCUCGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 10820 0.72 0.616765
Target:  5'- cGC-GCGCUGCu-GCAgcACCUGCGCg -3'
miRNA:   3'- aCGaCGUGAUGcuCGUguUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 10849 0.66 0.915613
Target:  5'- gGCgGCGCguggcCGAgGCGCGGCggGCGCg -3'
miRNA:   3'- aCGaCGUGau---GCU-CGUGUUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 10917 0.68 0.843645
Target:  5'- cGCgGUACUaccgcgagGCGAGC-CGGCUgGCGCg -3'
miRNA:   3'- aCGaCGUGA--------UGCUCGuGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 10999 0.69 0.780839
Target:  5'- cGcCUGCACUcCcAGCAgAGCCagGCGCa -3'
miRNA:   3'- aC-GACGUGAuGcUCGUgUUGGa-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 11351 0.7 0.731544
Target:  5'- gGgaGCACU-CGuacGCGCGGCCgcgcgGCGCg -3'
miRNA:   3'- aCgaCGUGAuGCu--CGUGUUGGa----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 11767 0.69 0.799634
Target:  5'- cUGCUGgACUucuaagggcggGCGGGCAguggcgcuuuCGACCcgGCGCg -3'
miRNA:   3'- -ACGACgUGA-----------UGCUCGU----------GUUGGa-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 12580 0.67 0.896524
Target:  5'- cGC-GCACcuaGAGCGCGACgaGCGg -3'
miRNA:   3'- aCGaCGUGaugCUCGUGUUGgaCGCg -5'
6348 3' -54.2 NC_001847.1 + 12628 0.69 0.799634
Target:  5'- gGCgGCACUGCucGUACAGCCgGCuGUa -3'
miRNA:   3'- aCGaCGUGAUGcuCGUGUUGGaCG-CG- -5'
6348 3' -54.2 NC_001847.1 + 12685 0.72 0.637873
Target:  5'- aGCUGCACUGCGcgucggcggGGUGCAggcagGCCgGUGCc -3'
miRNA:   3'- aCGACGUGAUGC---------UCGUGU-----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 12986 0.73 0.585216
Target:  5'- cGCUGCAgUACcGGCugGgggugggggGCCUGUGCc -3'
miRNA:   3'- aCGACGUgAUGcUCGugU---------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 13006 0.66 0.915613
Target:  5'- cGCgGCGCccUGCGcGCcggccgucGCGACCUGCaGCg -3'
miRNA:   3'- aCGaCGUG--AUGCuCG--------UGUUGGACG-CG- -5'
6348 3' -54.2 NC_001847.1 + 13081 0.68 0.867668
Target:  5'- cUGCUGCGCga-GuGCGCAACUgccauuuuuUGuCGCg -3'
miRNA:   3'- -ACGACGUGaugCuCGUGUUGG---------AC-GCG- -5'
6348 3' -54.2 NC_001847.1 + 13123 0.66 0.932431
Target:  5'- gGC-GCGCggGCGGcgccGCGCcGCCUGcCGCg -3'
miRNA:   3'- aCGaCGUGa-UGCU----CGUGuUGGAC-GCG- -5'
6348 3' -54.2 NC_001847.1 + 13270 0.71 0.669475
Target:  5'- aUGCUG-ACUGCGGuGC-CGGCCcugUGCGCg -3'
miRNA:   3'- -ACGACgUGAUGCU-CGuGUUGG---ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 13339 0.69 0.826596
Target:  5'- cUGCUGgCGCUACG-GCACucagagGCGCc -3'
miRNA:   3'- -ACGAC-GUGAUGCuCGUGuugga-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 13418 0.77 0.373797
Target:  5'- uUGUaGCGCUcGCgGAGCGgGGCCUGCGCu -3'
miRNA:   3'- -ACGaCGUGA-UG-CUCGUgUUGGACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.