miRNA display CGI


Results 41 - 60 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 108509 0.75 0.454475
Target:  5'- cGCaGCGCUugGAGCACGaggGCUUucGCGCc -3'
miRNA:   3'- aCGaCGUGAugCUCGUGU---UGGA--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 61334 0.75 0.454475
Target:  5'- cGCUGCAgCgcgGCGAcCACGGCgUGCGCu -3'
miRNA:   3'- aCGACGU-Ga--UGCUcGUGUUGgACGCG- -5'
6348 3' -54.2 NC_001847.1 + 68947 0.75 0.454475
Target:  5'- gGCUGCGCcuccagccagGCGuccAGCGCGGCCcGCGCg -3'
miRNA:   3'- aCGACGUGa---------UGC---UCGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 42490 0.75 0.454475
Target:  5'- cGCgccgaaGCGCUGCGGGCGaAACCgccggGCGCg -3'
miRNA:   3'- aCGa-----CGUGAUGCUCGUgUUGGa----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 18565 0.75 0.464015
Target:  5'- cGCUGCGCccaGAGCGCAgauGCCcacgUGCGCc -3'
miRNA:   3'- aCGACGUGaugCUCGUGU---UGG----ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 113303 0.75 0.464015
Target:  5'- cUGCUGCAC--CGAGCGCAGCauugGCGg -3'
miRNA:   3'- -ACGACGUGauGCUCGUGUUGga--CGCg -5'
6348 3' -54.2 NC_001847.1 + 107151 0.75 0.464015
Target:  5'- cGC-GCGCUGC-AGCGCGGCCcaGCGCg -3'
miRNA:   3'- aCGaCGUGAUGcUCGUGUUGGa-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 33841 0.75 0.473657
Target:  5'- cGCggGCGCgcaGAGCGCAGaggaCUGCGCg -3'
miRNA:   3'- aCGa-CGUGaugCUCGUGUUg---GACGCG- -5'
6348 3' -54.2 NC_001847.1 + 115818 0.75 0.473657
Target:  5'- cGCUGCGCUGCG-GCGgGcUCUGCGg -3'
miRNA:   3'- aCGACGUGAUGCuCGUgUuGGACGCg -5'
6348 3' -54.2 NC_001847.1 + 101454 0.75 0.473657
Target:  5'- cGCcGCGCcGCGAGC---GCCUGCGCc -3'
miRNA:   3'- aCGaCGUGaUGCUCGuguUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 131497 0.75 0.482421
Target:  5'- gGCUGCugUACGu-CGCGuucguguACCUGCGCc -3'
miRNA:   3'- aCGACGugAUGCucGUGU-------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 3935 0.75 0.493237
Target:  5'- cGCUGgcaGCgggcgGCGAGCGCGACCcacaGCGCc -3'
miRNA:   3'- aCGACg--UGa----UGCUCGUGUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 42392 0.75 0.493237
Target:  5'- gGCUGCACgGCGAGguCcuGGCCUGCcacGCg -3'
miRNA:   3'- aCGACGUGaUGCUCguG--UUGGACG---CG- -5'
6348 3' -54.2 NC_001847.1 + 115977 0.75 0.493237
Target:  5'- gUGCUGCGCgggguaacaACGGGCGCGGCC-GCuGCc -3'
miRNA:   3'- -ACGACGUGa--------UGCUCGUGUUGGaCG-CG- -5'
6348 3' -54.2 NC_001847.1 + 14941 0.75 0.493237
Target:  5'- gGCUGCGa-GCGGGCGCcGCUcGCGCg -3'
miRNA:   3'- aCGACGUgaUGCUCGUGuUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 34604 0.75 0.497198
Target:  5'- cGCUgGCGCgGCG-GCGCGccgaggaaguccggcGCCUGCGCg -3'
miRNA:   3'- aCGA-CGUGaUGCuCGUGU---------------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 94164 0.74 0.503166
Target:  5'- cGCgGCgGCUGCuGGGCGCGGCCgccucGCGCg -3'
miRNA:   3'- aCGaCG-UGAUG-CUCGUGUUGGa----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 50405 0.74 0.503166
Target:  5'- gUGCUGCGgUugGuGCGCGccuGCCUGCa- -3'
miRNA:   3'- -ACGACGUgAugCuCGUGU---UGGACGcg -5'
6348 3' -54.2 NC_001847.1 + 53360 0.74 0.503166
Target:  5'- cGCUGCugGCggccGCGGGCACcGCgaGCGCg -3'
miRNA:   3'- aCGACG--UGa---UGCUCGUGuUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 29373 0.74 0.51318
Target:  5'- cGCUGCGCgcCGAG-GCGGCCgccGCGCu -3'
miRNA:   3'- aCGACGUGauGCUCgUGUUGGa--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.