miRNA display CGI


Results 21 - 40 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 89947 0.77 0.373797
Target:  5'- cGCUcGCGCUGCGAG-ACGACUgccaGCGCg -3'
miRNA:   3'- aCGA-CGUGAUGCUCgUGUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 16690 0.77 0.373797
Target:  5'- gGCUGCGCggGCGAGC-CGGCagGCGCa -3'
miRNA:   3'- aCGACGUGa-UGCUCGuGUUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 18511 0.77 0.373797
Target:  5'- gGCUGCcgaggccagcGCUGCGGGCGCGccGCCguccGCGCc -3'
miRNA:   3'- aCGACG----------UGAUGCUCGUGU--UGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 110967 0.77 0.382272
Target:  5'- aGCgccacGCugUGCGAGUACGG-CUGCGCg -3'
miRNA:   3'- aCGa----CGugAUGCUCGUGUUgGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 101984 0.76 0.399601
Target:  5'- cGCUGCA--GCG-GCGCAACCgccGCGCu -3'
miRNA:   3'- aCGACGUgaUGCuCGUGUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 85161 0.76 0.408451
Target:  5'- gGCUccucuCGCggaggGCGuGCACGGCCUGCGCg -3'
miRNA:   3'- aCGAc----GUGa----UGCuCGUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 36713 0.76 0.408451
Target:  5'- cGCUGCGCgaaUACGAGCGCcggAGCC-GCGUc -3'
miRNA:   3'- aCGACGUG---AUGCUCGUG---UUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 87150 0.76 0.416521
Target:  5'- cGCUGCACgcuggccagcGCGAGCgACAGCCUcaacauccuccacGCGCu -3'
miRNA:   3'- aCGACGUGa---------UGCUCG-UGUUGGA-------------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 44088 0.76 0.417423
Target:  5'- cUGCUGCGgcguCUGCGccCGCcGCCUGCGCg -3'
miRNA:   3'- -ACGACGU----GAUGCucGUGuUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 116636 0.76 0.4256
Target:  5'- cGCaGCGCUggccucggcagccGCGGGCACGcuggugGCCUGCGUg -3'
miRNA:   3'- aCGaCGUGA-------------UGCUCGUGU------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 69481 0.76 0.426514
Target:  5'- aGCUGCGCgauggUGCGGGCGCGcacgcgGCCguuggcgGCGCa -3'
miRNA:   3'- aCGACGUG-----AUGCUCGUGU------UGGa------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 36030 0.76 0.426514
Target:  5'- gGCUGCGCgcggACGAGCACuAC--GCGCg -3'
miRNA:   3'- aCGACGUGa---UGCUCGUGuUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 49889 0.76 0.430183
Target:  5'- cUGCUGCACggcACGuGCugGGCCcggccgcgguggcgcUGCGCg -3'
miRNA:   3'- -ACGACGUGa--UGCuCGugUUGG---------------ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 103890 0.76 0.435722
Target:  5'- aGgUGCACgauCGAGCACAuuuCCggGCGCg -3'
miRNA:   3'- aCgACGUGau-GCUCGUGUu--GGa-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 29237 0.76 0.435722
Target:  5'- cGCgGC-CUGCcGGcCGCGGCCUGCGCg -3'
miRNA:   3'- aCGaCGuGAUGcUC-GUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 132050 0.76 0.435722
Target:  5'- cGCgGC-CUGCcGGcCGCGGCCUGCGCg -3'
miRNA:   3'- aCGaCGuGAUGcUC-GUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 116684 0.76 0.442235
Target:  5'- gGUccgGCGCUGCGGGCGCGgcaccgcacggcugGCCgcgGCGCa -3'
miRNA:   3'- aCGa--CGUGAUGCUCGUGU--------------UGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 42490 0.75 0.454475
Target:  5'- cGCgccgaaGCGCUGCGGGCGaAACCgccggGCGCg -3'
miRNA:   3'- aCGa-----CGUGAUGCUCGUgUUGGa----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 108509 0.75 0.454475
Target:  5'- cGCaGCGCUugGAGCACGaggGCUUucGCGCc -3'
miRNA:   3'- aCGaCGUGAugCUCGUGU---UGGA--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 67948 0.75 0.454475
Target:  5'- cGCUcgGCACgGCGuGUGCuACCUGCGCg -3'
miRNA:   3'- aCGA--CGUGaUGCuCGUGuUGGACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.