miRNA display CGI


Results 21 - 40 of 689 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 88909 0.66 0.937528
Target:  5'- gGCgGCuccCUugcGCGcGCGCGGCuCUGCGCc -3'
miRNA:   3'- aCGaCGu--GA---UGCuCGUGUUG-GACGCG- -5'
6348 3' -54.2 NC_001847.1 + 104886 0.66 0.93703
Target:  5'- aGCggugGCG--GCGAGCGCcccgcggGGCCcGCGCg -3'
miRNA:   3'- aCGa---CGUgaUGCUCGUG-------UUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 2073 0.66 0.93703
Target:  5'- aGCggugGCG--GCGAGCGCcccgcggGGCCcGCGCg -3'
miRNA:   3'- aCGa---CGUgaUGCUCGUG-------UUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 74285 0.66 0.93703
Target:  5'- cGCUcGCGCUggccucgGCGGGCGCGGagCUGCu- -3'
miRNA:   3'- aCGA-CGUGA-------UGCUCGUGUUg-GACGcg -5'
6348 3' -54.2 NC_001847.1 + 85865 0.66 0.936529
Target:  5'- cGCggauguuauacgGCGCggaccugaGCGAGCGCGuucGCCgGCGCc -3'
miRNA:   3'- aCGa-----------CGUGa-------UGCUCGUGU---UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 91626 0.66 0.932431
Target:  5'- gGCUGCgGCUGCG-GCuGCGG-CUGCGg -3'
miRNA:   3'- aCGACG-UGAUGCuCG-UGUUgGACGCg -5'
6348 3' -54.2 NC_001847.1 + 65095 0.66 0.932431
Target:  5'- gUGCUaaGCUGCGAGCG-AGCC-GCGg -3'
miRNA:   3'- -ACGAcgUGAUGCUCGUgUUGGaCGCg -5'
6348 3' -54.2 NC_001847.1 + 91674 0.66 0.932431
Target:  5'- gGCUGCgGCUGCG-GCuGCGG-CUGCGg -3'
miRNA:   3'- aCGACG-UGAUGCuCG-UGUUgGACGCg -5'
6348 3' -54.2 NC_001847.1 + 95981 0.66 0.932431
Target:  5'- cGCUGC-C-GCGGcuGCGCGGCCgGCaGCg -3'
miRNA:   3'- aCGACGuGaUGCU--CGUGUUGGaCG-CG- -5'
6348 3' -54.2 NC_001847.1 + 111270 0.66 0.932431
Target:  5'- aUGCgcGCGCUGCGAaaGCACuuuacGCGCg -3'
miRNA:   3'- -ACGa-CGUGAUGCU--CGUGuuggaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 13123 0.66 0.932431
Target:  5'- gGC-GCGCggGCGGcgccGCGCcGCCUGcCGCg -3'
miRNA:   3'- aCGaCGUGa-UGCU----CGUGuUGGAC-GCG- -5'
6348 3' -54.2 NC_001847.1 + 7285 0.66 0.932431
Target:  5'- cGCUccGCAgUACGAGC-CG-CUgGCGCg -3'
miRNA:   3'- aCGA--CGUgAUGCUCGuGUuGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 31634 0.66 0.932431
Target:  5'- cGCUaguGCACUuuguuucgGCGGGCcCGgaGCCcGCGCg -3'
miRNA:   3'- aCGA---CGUGA--------UGCUCGuGU--UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 124712 0.66 0.932431
Target:  5'- aGCcggGCGCggggGCGgcAGCGCgAACC-GCGCg -3'
miRNA:   3'- aCGa--CGUGa---UGC--UCGUG-UUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 123044 0.66 0.932431
Target:  5'- cGCUggaaGUACggccGCGGGCGCcgGACCcgcgGCGCu -3'
miRNA:   3'- aCGA----CGUGa---UGCUCGUG--UUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 57960 0.66 0.932431
Target:  5'- aGCaGCGCggucgcgGCGucgggaGGCAgGACCgGCGCg -3'
miRNA:   3'- aCGaCGUGa------UGC------UCGUgUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 122166 0.66 0.932431
Target:  5'- aGCcgGUACUGC-AGCGCcauGGCCUGCu- -3'
miRNA:   3'- aCGa-CGUGAUGcUCGUG---UUGGACGcg -5'
6348 3' -54.2 NC_001847.1 + 43779 0.66 0.932431
Target:  5'- -cCUGCGCguagagcCGAGCACGGgC-GCGCu -3'
miRNA:   3'- acGACGUGau-----GCUCGUGUUgGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 115290 0.66 0.932431
Target:  5'- aGCcgGCGCcccCGGGCGCGgGCCaaggGCGCu -3'
miRNA:   3'- aCGa-CGUGau-GCUCGUGU-UGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 95629 0.66 0.932431
Target:  5'- aGCUuCaaagGCUGCGAGguguuCACcgggAGCCUGCGCg -3'
miRNA:   3'- aCGAcG----UGAUGCUC-----GUG----UUGGACGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.