miRNA display CGI


Results 41 - 60 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 6546 0.66 0.931907
Target:  5'- cGCcgGUGCga-GGGCGCGACCUGUucuaaccGCa -3'
miRNA:   3'- aCGa-CGUGaugCUCGUGUUGGACG-------CG- -5'
6348 3' -54.2 NC_001847.1 + 108404 0.66 0.931907
Target:  5'- cGC-GCuCUACG-GCcCAcgugcccGCCUGCGCg -3'
miRNA:   3'- aCGaCGuGAUGCuCGuGU-------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 50961 0.66 0.931907
Target:  5'- cUGCUGgCGC-ACGAcgcccagucggcgGCGCAGCUcgaGCGCg -3'
miRNA:   3'- -ACGAC-GUGaUGCU-------------CGUGUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 43427 0.66 0.931907
Target:  5'- cGCUGCuGCUGCuGGCcggcgucGCGACCcggggcgacgGCGCg -3'
miRNA:   3'- aCGACG-UGAUGcUCG-------UGUUGGa---------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 64988 0.66 0.931907
Target:  5'- cGgaGCACUucuuugugccuguGCGAGCG-GACCgcaagcgGCGCg -3'
miRNA:   3'- aCgaCGUGA-------------UGCUCGUgUUGGa------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 109359 0.66 0.931907
Target:  5'- cGCcgGUGCga-GGGCGCGACCUGUucuaaccGCa -3'
miRNA:   3'- aCGa-CGUGaugCUCGUGUUGGACG-------CG- -5'
6348 3' -54.2 NC_001847.1 + 118757 0.66 0.931907
Target:  5'- gGCUGCGCgaGCGGGCgaacauGCAagggccgacauugGCCgugcuggGCGCg -3'
miRNA:   3'- aCGACGUGa-UGCUCG------UGU-------------UGGa------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 128010 0.66 0.930852
Target:  5'- cGCUGaUGCUGCucacgggccaggagGAGCcCGGCCgugGCGCc -3'
miRNA:   3'- aCGAC-GUGAUG--------------CUCGuGUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 53803 0.66 0.92925
Target:  5'- cUGCcGCACgugcaaggcgugucGCGGGCGCGGCUgGCGg -3'
miRNA:   3'- -ACGaCGUGa-------------UGCUCGUGUUGGaCGCg -5'
6348 3' -54.2 NC_001847.1 + 27188 0.66 0.927079
Target:  5'- gGCgggGUGCUucagcguuaggACGGGCGCG-CCgggGCGCu -3'
miRNA:   3'- aCGa--CGUGA-----------UGCUCGUGUuGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 66188 0.66 0.927079
Target:  5'- gGCcGCGCUggACGccuggcuggaGGCGCAGCCcGCGg -3'
miRNA:   3'- aCGaCGUGA--UGC----------UCGUGUUGGaCGCg -5'
6348 3' -54.2 NC_001847.1 + 30714 0.66 0.927079
Target:  5'- cGCgGUGCUGCcgcGGCGCAgugcGCC-GCGCg -3'
miRNA:   3'- aCGaCGUGAUGc--UCGUGU----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 85196 0.66 0.927079
Target:  5'- gUGCgcgGCACcGCGcgccacGGCGucCAACgUGCGCa -3'
miRNA:   3'- -ACGa--CGUGaUGC------UCGU--GUUGgACGCG- -5'
6348 3' -54.2 NC_001847.1 + 1396 0.66 0.927079
Target:  5'- cGCUGCcgguACUcgcgcggcggcACGGGCACcGCggUGCGCg -3'
miRNA:   3'- aCGACG----UGA-----------UGCUCGUGuUGg-ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 133699 0.66 0.927079
Target:  5'- aGCucaaUGCACc-CGAGCGCAaauaguGCCUggcggGCGCg -3'
miRNA:   3'- aCG----ACGUGauGCUCGUGU------UGGA-----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 45136 0.66 0.927079
Target:  5'- aGCUcgGCGCcuucUGCgGGGUGCAGCCccgcgGCGCg -3'
miRNA:   3'- aCGA--CGUG----AUG-CUCGUGUUGGa----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 51541 0.66 0.927079
Target:  5'- gGCgGCGCccagGCGucGGCGCAgcucGCCaGCGCu -3'
miRNA:   3'- aCGaCGUGa---UGC--UCGUGU----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 104209 0.66 0.927079
Target:  5'- cGCUGCcgguACUcgcgcggcggcACGGGCACcGCggUGCGCg -3'
miRNA:   3'- aCGACG----UGA-----------UGCUCGUGuUGg-ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 95237 0.66 0.927079
Target:  5'- cGCgaucggggGCGCgaucGgGGGCGCGAUCggggGCGCg -3'
miRNA:   3'- aCGa-------CGUGa---UgCUCGUGUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 95189 0.66 0.927079
Target:  5'- cGCgaucggggGCGCgaucGgGGGCGCGAUCggggGCGCg -3'
miRNA:   3'- aCGa-------CGUGa---UgCUCGUGUUGGa---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.