miRNA display CGI


Results 41 - 60 of 689 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 3157 0.66 0.937528
Target:  5'- gGCgGCGCgGCGGGCcGCcuCCaGCGCc -3'
miRNA:   3'- aCGaCGUGaUGCUCG-UGuuGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 58656 0.66 0.937528
Target:  5'- gGCUcccagGCGCUGCaGGCGCcgcuGCCguggaaGCGCg -3'
miRNA:   3'- aCGA-----CGUGAUGcUCGUGu---UGGa-----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 88627 0.66 0.937528
Target:  5'- gUGCgcGCGC-ACGuGCGCGagaGCCUGCucaGCg -3'
miRNA:   3'- -ACGa-CGUGaUGCuCGUGU---UGGACG---CG- -5'
6348 3' -54.2 NC_001847.1 + 95307 0.66 0.937528
Target:  5'- gGCgccuccagGCGCgGCGccGGCAgGGCCgaagGCGCa -3'
miRNA:   3'- aCGa-------CGUGaUGC--UCGUgUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 113029 0.66 0.937528
Target:  5'- cGCcGCGCgucugggACGccGGCAgCAGCCgcaGCGCg -3'
miRNA:   3'- aCGaCGUGa------UGC--UCGU-GUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 57960 0.66 0.932431
Target:  5'- aGCaGCGCggucgcgGCGucgggaGGCAgGACCgGCGCg -3'
miRNA:   3'- aCGaCGUGa------UGC------UCGUgUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 43779 0.66 0.932431
Target:  5'- -cCUGCGCguagagcCGAGCACGGgC-GCGCu -3'
miRNA:   3'- acGACGUGau-----GCUCGUGUUgGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 45136 0.66 0.927079
Target:  5'- aGCUcgGCGCcuucUGCgGGGUGCAGCCccgcgGCGCg -3'
miRNA:   3'- aCGA--CGUG----AUG-CUCGUGUUGGa----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 51541 0.66 0.927079
Target:  5'- gGCgGCGCccagGCGucGGCGCAgcucGCCaGCGCu -3'
miRNA:   3'- aCGaCGUGa---UGC--UCGUGU----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 85196 0.66 0.927079
Target:  5'- gUGCgcgGCACcGCGcgccacGGCGucCAACgUGCGCa -3'
miRNA:   3'- -ACGa--CGUGaUGC------UCGU--GUUGgACGCG- -5'
6348 3' -54.2 NC_001847.1 + 95189 0.66 0.927079
Target:  5'- cGCgaucggggGCGCgaucGgGGGCGCGAUCggggGCGCg -3'
miRNA:   3'- aCGa-------CGUGa---UgCUCGUGUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 95237 0.66 0.927079
Target:  5'- cGCgaucggggGCGCgaucGgGGGCGCGAUCggggGCGCg -3'
miRNA:   3'- aCGa-------CGUGa---UgCUCGUGUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 133699 0.66 0.927079
Target:  5'- aGCucaaUGCACc-CGAGCGCAaauaguGCCUggcggGCGCg -3'
miRNA:   3'- aCG----ACGUGauGCUCGUGU------UGGA-----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 47049 0.66 0.927079
Target:  5'- ---cGCGgUGCGuGuCGCGGCCgGCGCg -3'
miRNA:   3'- acgaCGUgAUGCuC-GUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 50808 0.66 0.927079
Target:  5'- cGCUGCGgccgguacgguuUUACGggggGGCGCuGCCcGCGCc -3'
miRNA:   3'- aCGACGU------------GAUGC----UCGUGuUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 70257 0.66 0.927079
Target:  5'- gGCggGCGCgcgGCGuugcucucGGCGCGcGCCUGCGa -3'
miRNA:   3'- aCGa-CGUGa--UGC--------UCGUGU-UGGACGCg -5'
6348 3' -54.2 NC_001847.1 + 128010 0.66 0.930852
Target:  5'- cGCUGaUGCUGCucacgggccaggagGAGCcCGGCCgugGCGCc -3'
miRNA:   3'- aCGAC-GUGAUG--------------CUCGuGUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 108404 0.66 0.931907
Target:  5'- cGC-GCuCUACG-GCcCAcgugcccGCCUGCGCg -3'
miRNA:   3'- aCGaCGuGAUGCuCGuGU-------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 6546 0.66 0.931907
Target:  5'- cGCcgGUGCga-GGGCGCGACCUGUucuaaccGCa -3'
miRNA:   3'- aCGa-CGUGaugCUCGUGUUGGACG-------CG- -5'
6348 3' -54.2 NC_001847.1 + 122166 0.66 0.932431
Target:  5'- aGCcgGUACUGC-AGCGCcauGGCCUGCu- -3'
miRNA:   3'- aCGa-CGUGAUGcUCGUG---UUGGACGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.