miRNA display CGI


Results 61 - 80 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 30714 0.66 0.927079
Target:  5'- cGCgGUGCUGCcgcGGCGCAgugcGCC-GCGCg -3'
miRNA:   3'- aCGaCGUGAUGc--UCGUGU----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 95237 0.66 0.927079
Target:  5'- cGCgaucggggGCGCgaucGgGGGCGCGAUCggggGCGCg -3'
miRNA:   3'- aCGa-------CGUGa---UgCUCGUGUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 106142 0.66 0.927079
Target:  5'- aGCUGCGCcagcACGGcGCGCucuAGCaugGCGCa -3'
miRNA:   3'- aCGACGUGa---UGCU-CGUG---UUGga-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 27188 0.66 0.927079
Target:  5'- gGCgggGUGCUucagcguuaggACGGGCGCG-CCgggGCGCu -3'
miRNA:   3'- aCGa--CGUGA-----------UGCUCGUGUuGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 1396 0.66 0.927079
Target:  5'- cGCUGCcgguACUcgcgcggcggcACGGGCACcGCggUGCGCg -3'
miRNA:   3'- aCGACG----UGA-----------UGCUCGUGuUGg-ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 70257 0.66 0.927079
Target:  5'- gGCggGCGCgcgGCGuugcucucGGCGCGcGCCUGCGa -3'
miRNA:   3'- aCGa-CGUGa--UGC--------UCGUGU-UGGACGCg -5'
6348 3' -54.2 NC_001847.1 + 50808 0.66 0.927079
Target:  5'- cGCUGCGgccgguacgguuUUACGggggGGCGCuGCCcGCGCc -3'
miRNA:   3'- aCGACGU------------GAUGC----UCGUGuUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 86353 0.66 0.92653
Target:  5'- cUGCUGCACcggcuguUGCG-GCGguGCCcGCGg -3'
miRNA:   3'- -ACGACGUG-------AUGCuCGUguUGGaCGCg -5'
6348 3' -54.2 NC_001847.1 + 2861 0.66 0.92653
Target:  5'- cGCUGCgACUcGCGGGCGuCGucgucggGCCggGUGCg -3'
miRNA:   3'- aCGACG-UGA-UGCUCGU-GU-------UGGa-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 83347 0.66 0.92653
Target:  5'- aUGCUGguCUGCGAccgggacGCGCGgggcgaGCUgGCGCc -3'
miRNA:   3'- -ACGACguGAUGCU-------CGUGU------UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 8117 0.66 0.925978
Target:  5'- aGCgcagGCGCggggccccagggGCGGGCG-GugCUGCGCg -3'
miRNA:   3'- aCGa---CGUGa-----------UGCUCGUgUugGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 76701 0.66 0.925424
Target:  5'- cGCUGCgGCUggaaauggccgacgGCGAGCucguCGACUUGCu- -3'
miRNA:   3'- aCGACG-UGA--------------UGCUCGu---GUUGGACGcg -5'
6348 3' -54.2 NC_001847.1 + 2149 0.66 0.924867
Target:  5'- -uUUGCGCUGCGcAGCACcaggucucgcagcGCCcGCGCc -3'
miRNA:   3'- acGACGUGAUGC-UCGUGu------------UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 48710 0.66 0.923746
Target:  5'- cGCUGCccGCgccGCGcAGCGCcGCCaacaaauccacgagcUGCGCg -3'
miRNA:   3'- aCGACG--UGa--UGC-UCGUGuUGG---------------ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 126095 0.66 0.921473
Target:  5'- cGCUGCACggggggGCgGAGCACAggaGCUcGgGUg -3'
miRNA:   3'- aCGACGUGa-----UG-CUCGUGU---UGGaCgCG- -5'
6348 3' -54.2 NC_001847.1 + 77730 0.66 0.921473
Target:  5'- gUGCUGaucaccuccaGCUccGCGAGCGgGACCcGcCGCa -3'
miRNA:   3'- -ACGACg---------UGA--UGCUCGUgUUGGaC-GCG- -5'
6348 3' -54.2 NC_001847.1 + 118462 0.66 0.921473
Target:  5'- gGCcucgUGC-CUGCG-GCGCAagGCCcggGCGCg -3'
miRNA:   3'- aCG----ACGuGAUGCuCGUGU--UGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 127218 0.66 0.921473
Target:  5'- aGCUGCAaaACGgcgggggaagaAGCgGCGGCCgccGCGCg -3'
miRNA:   3'- aCGACGUgaUGC-----------UCG-UGUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 967 0.66 0.921473
Target:  5'- cGCUGCGCcggGCGucuauGCGcCGGCCcGCaGCa -3'
miRNA:   3'- aCGACGUGa--UGCu----CGU-GUUGGaCG-CG- -5'
6348 3' -54.2 NC_001847.1 + 5579 0.66 0.921473
Target:  5'- gUGUUGCAgUACGGGUGuCAAaaaGCGCg -3'
miRNA:   3'- -ACGACGUgAUGCUCGU-GUUggaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.