miRNA display CGI


Results 21 - 40 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 3876 0.67 0.882569
Target:  5'- gGCUGCGCaGCucccagcgGAGCG-AGCCguUGCGCg -3'
miRNA:   3'- aCGACGUGaUG--------CUCGUgUUGG--ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 3893 0.69 0.817785
Target:  5'- cGCgGCGCcGCG-GCGUAGCCaGCGCg -3'
miRNA:   3'- aCGaCGUGaUGCuCGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 3935 0.75 0.493237
Target:  5'- cGCUGgcaGCgggcgGCGAGCGCGACCcacaGCGCc -3'
miRNA:   3'- aCGACg--UGa----UGCUCGUGUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 4232 0.73 0.585216
Target:  5'- gUGCcgGCGC-GCGccGGCACGAgCUGCGCc -3'
miRNA:   3'- -ACGa-CGUGaUGC--UCGUGUUgGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 4856 0.69 0.799634
Target:  5'- aUGUaugGCGCcgggACGGGCACAGCCa-CGCg -3'
miRNA:   3'- -ACGa--CGUGa---UGCUCGUGUUGGacGCG- -5'
6348 3' -54.2 NC_001847.1 + 5194 0.74 0.523275
Target:  5'- ---aGCGCcGCGAGCGCGGCaaGCGCg -3'
miRNA:   3'- acgaCGUGaUGCUCGUGUUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 5579 0.66 0.921473
Target:  5'- gUGUUGCAgUACGGGUGuCAAaaaGCGCg -3'
miRNA:   3'- -ACGACGUgAUGCUCGU-GUUggaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 5883 0.68 0.843645
Target:  5'- cGCUGCGC-GC-AGgGCGGCC-GCGCc -3'
miRNA:   3'- aCGACGUGaUGcUCgUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 6546 0.66 0.931907
Target:  5'- cGCcgGUGCga-GGGCGCGACCUGUucuaaccGCa -3'
miRNA:   3'- aCGa-CGUGaugCUCGUGUUGGACG-------CG- -5'
6348 3' -54.2 NC_001847.1 + 6893 0.73 0.55399
Target:  5'- aGCaGUGCgucgGCGAGCGCGcgcgcgcCCUGCGCg -3'
miRNA:   3'- aCGaCGUGa---UGCUCGUGUu------GGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 7195 0.69 0.797783
Target:  5'- uUGgaGCGCguccuCGAGCGCGGCUgggccguccaugGCGCu -3'
miRNA:   3'- -ACgaCGUGau---GCUCGUGUUGGa-----------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 7251 0.7 0.731544
Target:  5'- gGUgGCugUGCGGGCGCGGCggGgGCa -3'
miRNA:   3'- aCGaCGugAUGCUCGUGUUGgaCgCG- -5'
6348 3' -54.2 NC_001847.1 + 7285 0.66 0.932431
Target:  5'- cGCUccGCAgUACGAGC-CG-CUgGCGCg -3'
miRNA:   3'- aCGA--CGUgAUGCUCGuGUuGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 7696 0.68 0.843645
Target:  5'- cGUUGCGgUGCugGAGCGCGcCUUGgGCa -3'
miRNA:   3'- aCGACGUgAUG--CUCGUGUuGGACgCG- -5'
6348 3' -54.2 NC_001847.1 + 8117 0.66 0.925978
Target:  5'- aGCgcagGCGCggggccccagggGCGGGCG-GugCUGCGCg -3'
miRNA:   3'- aCGa---CGUGa-----------UGCUCGUgUugGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 8230 0.73 0.574762
Target:  5'- aGCUGCGCcACGcGCugG-CCUGCGg -3'
miRNA:   3'- aCGACGUGaUGCuCGugUuGGACGCg -5'
6348 3' -54.2 NC_001847.1 + 8253 0.66 0.937528
Target:  5'- gGCaGCA--ACGAGCGguuCCUGCGUg -3'
miRNA:   3'- aCGaCGUgaUGCUCGUguuGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 8596 0.66 0.9095
Target:  5'- aGCcGC---GCGAGCGuCAGCCgcaGCGCa -3'
miRNA:   3'- aCGaCGugaUGCUCGU-GUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 8643 0.66 0.921473
Target:  5'- cGCUGCggACU-CGGGCGCccaGACgaugGCGCg -3'
miRNA:   3'- aCGACG--UGAuGCUCGUG---UUGga--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 9493 0.71 0.679957
Target:  5'- aGCUGCGCgccgcgACGAGCGgAcccgaGCCgagcgggcgGCGCg -3'
miRNA:   3'- aCGACGUGa-----UGCUCGUgU-----UGGa--------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.