miRNA display CGI


Results 21 - 40 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 131862 0.7 0.761477
Target:  5'- aGCUGCGCgcCGuGCucgcCGGCC-GCGCg -3'
miRNA:   3'- aCGACGUGauGCuCGu---GUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 131754 0.69 0.780839
Target:  5'- cGCUGC-UUGCGGagggcuuuGCGCGGCUcgGCGCg -3'
miRNA:   3'- aCGACGuGAUGCU--------CGUGUUGGa-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 131701 0.71 0.700786
Target:  5'- cGCUguggGCGCUGCc-GCACGuggcgGCCUGCGUg -3'
miRNA:   3'- aCGA----CGUGAUGcuCGUGU-----UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 131650 0.66 0.937528
Target:  5'- aGCUcGCGCggcucaugUGCGAGCucuCGgcgcGCCgGCGCg -3'
miRNA:   3'- aCGA-CGUG--------AUGCUCGu--GU----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 131548 0.67 0.903137
Target:  5'- gGCUGCagagcgcgaaGCUcGCGGGCccggaccuGCAGCUgGCGCg -3'
miRNA:   3'- aCGACG----------UGA-UGCUCG--------UGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 131497 0.75 0.482421
Target:  5'- gGCUGCugUACGu-CGCGuucguguACCUGCGCc -3'
miRNA:   3'- aCGACGugAUGCucGUGU-------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 131407 0.77 0.365451
Target:  5'- cGCUGCACggccGCGuGCGCGccgugGCCgGCGCg -3'
miRNA:   3'- aCGACGUGa---UGCuCGUGU-----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 131269 0.71 0.679957
Target:  5'- cGCUcCGCUGgGAGCugcGCAGCCccgGCGCc -3'
miRNA:   3'- aCGAcGUGAUgCUCG---UGUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 131232 0.7 0.761477
Target:  5'- cGCUGUGCgUGCGuccGCGCcACC-GCGCg -3'
miRNA:   3'- aCGACGUG-AUGCu--CGUGuUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 131218 0.73 0.606226
Target:  5'- cGCgGCGCcagcGCGGGCgcGCAACCgGCGCc -3'
miRNA:   3'- aCGaCGUGa---UGCUCG--UGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 130949 0.71 0.690398
Target:  5'- gGCUGC-CUGC--GCGCGGCCcacggGCGCg -3'
miRNA:   3'- aCGACGuGAUGcuCGUGUUGGa----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 130843 0.69 0.808795
Target:  5'- gGCgGCGC-GCGAGUACcaaggcGCCgGCGCg -3'
miRNA:   3'- aCGaCGUGaUGCUCGUGu-----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 130506 0.66 0.9095
Target:  5'- gGCUgagGCGC-GCGAGCGCcggcgGGCCgcccGCGCc -3'
miRNA:   3'- aCGA---CGUGaUGCUCGUG-----UUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 130433 0.83 0.170449
Target:  5'- gGCUGUcuacacGC-ACGGGCACAGCCUGCGUu -3'
miRNA:   3'- aCGACG------UGaUGCUCGUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 129728 0.72 0.658961
Target:  5'- gGCUaaccGCGCUcucACuGAGCGCGcgGCCUGUGCc -3'
miRNA:   3'- aCGA----CGUGA---UG-CUCGUGU--UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 129438 0.67 0.872988
Target:  5'- cUGCUGCgggguguccaagcgGCUACuuGAGCugGCGGCCgccgccGCGCg -3'
miRNA:   3'- -ACGACG--------------UGAUG--CUCG--UGUUGGa-----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 129325 0.68 0.835219
Target:  5'- gUGCUGCACgcacccgGCGcgccaAGCGCAAgCgcgGUGCc -3'
miRNA:   3'- -ACGACGUGa------UGC-----UCGUGUUgGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 129245 0.69 0.799634
Target:  5'- gGC-GCACaaucUGCGAcgGCGCGGCCgcccUGCGCg -3'
miRNA:   3'- aCGaCGUG----AUGCU--CGUGUUGG----ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 128301 0.67 0.887563
Target:  5'- gUGCUGCu---CGAGCACcucGCCgaggacgucaccuuUGCGCu -3'
miRNA:   3'- -ACGACGugauGCUCGUGu--UGG--------------ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 128124 0.67 0.896524
Target:  5'- cGCUgGCGCUgGCGGauGCGCGGCCgcucGuCGCg -3'
miRNA:   3'- aCGA-CGUGA-UGCU--CGUGUUGGa---C-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.