miRNA display CGI


Results 1 - 20 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 134226 0.66 0.915613
Target:  5'- gGCUucccgGCGCcgGCGGGCGgCGGCCgGCGg -3'
miRNA:   3'- aCGA-----CGUGa-UGCUCGU-GUUGGaCGCg -5'
6348 3' -54.2 NC_001847.1 + 134121 0.72 0.627317
Target:  5'- cUGCgGCGCgccGCGGGCgGCGGCCUgguggaGCGCg -3'
miRNA:   3'- -ACGaCGUGa--UGCUCG-UGUUGGA------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 133991 0.67 0.882569
Target:  5'- gGCcGCGCUGCcgGAGcCGCGcGCCgagGCGCc -3'
miRNA:   3'- aCGaCGUGAUG--CUC-GUGU-UGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 133945 0.69 0.830068
Target:  5'- aGCUGgCGCccgACGAGCugcCGGCCgcggcgguggccuucUGCGCg -3'
miRNA:   3'- aCGAC-GUGa--UGCUCGu--GUUGG---------------ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 133776 0.73 0.585216
Target:  5'- cUGCcgGCGCUcgACGGGCGCAaggacaugGCC-GCGCa -3'
miRNA:   3'- -ACGa-CGUGA--UGCUCGUGU--------UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 133699 0.66 0.927079
Target:  5'- aGCucaaUGCACc-CGAGCGCAaauaguGCCUggcggGCGCg -3'
miRNA:   3'- aCG----ACGUGauGCUCGUGU------UGGA-----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 133673 0.7 0.761477
Target:  5'- cGCUGCGgcuCUGCcgcGGCgGCAACgUGCGCu -3'
miRNA:   3'- aCGACGU---GAUGc--UCG-UGUUGgACGCG- -5'
6348 3' -54.2 NC_001847.1 + 133527 0.66 0.927079
Target:  5'- cGCgGUGCUGCcgcGGCGCAgugcGCC-GCGCg -3'
miRNA:   3'- aCGaCGUGAUGc--UCGUGU----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 133363 0.67 0.889667
Target:  5'- cUGCUGCuCU-CGAcGCGgGACCUggccuuccgcgGCGCg -3'
miRNA:   3'- -ACGACGuGAuGCU-CGUgUUGGA-----------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 133308 0.68 0.867668
Target:  5'- gGCcggGCGCUggACGGGCGC-GCCggacgugaGCGCg -3'
miRNA:   3'- aCGa--CGUGA--UGCUCGUGuUGGa-------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 133170 0.7 0.761477
Target:  5'- cGCUGCuacCUgcGCGGGCGCGGgCUGCc- -3'
miRNA:   3'- aCGACGu--GA--UGCUCGUGUUgGACGcg -5'
6348 3' -54.2 NC_001847.1 + 132982 0.79 0.275549
Target:  5'- cGCggGCGCUGCGAGacCugGugCUGCGCa -3'
miRNA:   3'- aCGa-CGUGAUGCUC--GugUugGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 132737 0.78 0.341192
Target:  5'- aGCgGCGCaGCGAGcCACGGCCgaGCGCg -3'
miRNA:   3'- aCGaCGUGaUGCUC-GUGUUGGa-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 132269 0.69 0.808795
Target:  5'- cGCgGCGCgGCGGcccGCGCGucgGCCUGgGCg -3'
miRNA:   3'- aCGaCGUGaUGCU---CGUGU---UGGACgCG- -5'
6348 3' -54.2 NC_001847.1 + 132186 0.74 0.51318
Target:  5'- cGCUGCGCgcCGAG-GCGGCCgccGCGCu -3'
miRNA:   3'- aCGACGUGauGCUCgUGUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 132077 1.11 0.002381
Target:  5'- cUGCUGCACUACGAGCACAACCUGCGCc -3'
miRNA:   3'- -ACGACGUGAUGCUCGUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 132050 0.76 0.435722
Target:  5'- cGCgGC-CUGCcGGcCGCGGCCUGCGCg -3'
miRNA:   3'- aCGaCGuGAUGcUC-GUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 131940 0.69 0.826596
Target:  5'- gGCUGCGCgagcugGCGGaccgcuGCGCcgucGCCUGcCGCg -3'
miRNA:   3'- aCGACGUGa-----UGCU------CGUGu---UGGAC-GCG- -5'
6348 3' -54.2 NC_001847.1 + 131907 0.67 0.882569
Target:  5'- cGCUGCugUACcgcaAGcCGCGGCg-GCGCg -3'
miRNA:   3'- aCGACGugAUGc---UC-GUGUUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 131903 0.7 0.771224
Target:  5'- cUGCcGC-CgGCGAGCACGGCgCgggcgGCGCg -3'
miRNA:   3'- -ACGaCGuGaUGCUCGUGUUG-Ga----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.