miRNA display CGI


Results 1 - 20 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 61938 0.66 0.937528
Target:  5'- cGCgucaGCgGCG-GCGCGGCCcGCGCg -3'
miRNA:   3'- aCGacg-UGaUGCuCGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 124712 0.66 0.932431
Target:  5'- aGCcggGCGCggggGCGgcAGCGCgAACC-GCGCg -3'
miRNA:   3'- aCGa--CGUGa---UGC--UCGUG-UUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 123044 0.66 0.932431
Target:  5'- cGCUggaaGUACggccGCGGGCGCcgGACCcgcgGCGCu -3'
miRNA:   3'- aCGA----CGUGa---UGCUCGUG--UUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 57960 0.66 0.932431
Target:  5'- aGCaGCGCggucgcgGCGucgggaGGCAgGACCgGCGCg -3'
miRNA:   3'- aCGaCGUGa------UGC------UCGUgUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 43779 0.66 0.932431
Target:  5'- -cCUGCGCguagagcCGAGCACGGgC-GCGCu -3'
miRNA:   3'- acGACGUGau-----GCUCGUGUUgGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 122166 0.66 0.932431
Target:  5'- aGCcgGUACUGC-AGCGCcauGGCCUGCu- -3'
miRNA:   3'- aCGa-CGUGAUGcUCGUG---UUGGACGcg -5'
6348 3' -54.2 NC_001847.1 + 6546 0.66 0.931907
Target:  5'- cGCcgGUGCga-GGGCGCGACCUGUucuaaccGCa -3'
miRNA:   3'- aCGa-CGUGaugCUCGUGUUGGACG-------CG- -5'
6348 3' -54.2 NC_001847.1 + 108404 0.66 0.931907
Target:  5'- cGC-GCuCUACG-GCcCAcgugcccGCCUGCGCg -3'
miRNA:   3'- aCGaCGuGAUGCuCGuGU-------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 128010 0.66 0.930852
Target:  5'- cGCUGaUGCUGCucacgggccaggagGAGCcCGGCCgugGCGCc -3'
miRNA:   3'- aCGAC-GUGAUG--------------CUCGuGUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 95981 0.66 0.932431
Target:  5'- cGCUGC-C-GCGGcuGCGCGGCCgGCaGCg -3'
miRNA:   3'- aCGACGuGaUGCU--CGUGUUGGaCG-CG- -5'
6348 3' -54.2 NC_001847.1 + 111270 0.66 0.932431
Target:  5'- aUGCgcGCGCUGCGAaaGCACuuuacGCGCg -3'
miRNA:   3'- -ACGa-CGUGAUGCU--CGUGuuggaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 2073 0.66 0.93703
Target:  5'- aGCggugGCG--GCGAGCGCcccgcggGGCCcGCGCg -3'
miRNA:   3'- aCGa---CGUgaUGCUCGUG-------UUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 113029 0.66 0.937528
Target:  5'- cGCcGCGCgucugggACGccGGCAgCAGCCgcaGCGCg -3'
miRNA:   3'- aCGaCGUGa------UGC--UCGU-GUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 95307 0.66 0.937528
Target:  5'- gGCgccuccagGCGCgGCGccGGCAgGGCCgaagGCGCa -3'
miRNA:   3'- aCGa-------CGUGaUGC--UCGUgUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 88627 0.66 0.937528
Target:  5'- gUGCgcGCGC-ACGuGCGCGagaGCCUGCucaGCg -3'
miRNA:   3'- -ACGa-CGUGaUGCuCGUGU---UGGACG---CG- -5'
6348 3' -54.2 NC_001847.1 + 58656 0.66 0.937528
Target:  5'- gGCUcccagGCGCUGCaGGCGCcgcuGCCguggaaGCGCg -3'
miRNA:   3'- aCGA-----CGUGAUGcUCGUGu---UGGa-----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 3157 0.66 0.937528
Target:  5'- gGCgGCGCgGCGGGCcGCcuCCaGCGCc -3'
miRNA:   3'- aCGaCGUGaUGCUCG-UGuuGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 131650 0.66 0.937528
Target:  5'- aGCUcGCGCggcucaugUGCGAGCucuCGgcgcGCCgGCGCg -3'
miRNA:   3'- aCGA-CGUG--------AUGCUCGu--GU----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 117433 0.66 0.937528
Target:  5'- aGCcGCugUACGuGCACuGCg-GCGUg -3'
miRNA:   3'- aCGaCGugAUGCuCGUGuUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 36966 0.66 0.937528
Target:  5'- gGCUGC-CUAgaggacUGGGCGCG-CCgcgGCGUg -3'
miRNA:   3'- aCGACGuGAU------GCUCGUGUuGGa--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.