miRNA display CGI


Results 21 - 40 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 34604 0.75 0.497198
Target:  5'- cGCUgGCGCgGCG-GCGCGccgaggaaguccggcGCCUGCGCg -3'
miRNA:   3'- aCGA-CGUGaUGCuCGUGU---------------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 33841 0.75 0.473657
Target:  5'- cGCggGCGCgcaGAGCGCAGaggaCUGCGCg -3'
miRNA:   3'- aCGa-CGUGaugCUCGUGUUg---GACGCG- -5'
6348 3' -54.2 NC_001847.1 + 13418 0.77 0.373797
Target:  5'- uUGUaGCGCUcGCgGAGCGgGGCCUGCGCu -3'
miRNA:   3'- -ACGaCGUGA-UG-CUCGUgUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 21014 0.8 0.268914
Target:  5'- cGCgGCugUGCGGGCGac-CCUGCGCa -3'
miRNA:   3'- aCGaCGugAUGCUCGUguuGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 83917 0.74 0.543686
Target:  5'- aGCgGCGCgcccGCGAGCAgGGCCcgcucgaagUGCGCg -3'
miRNA:   3'- aCGaCGUGa---UGCUCGUgUUGG---------ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 56275 0.74 0.519228
Target:  5'- gGCUGCGCgagggcgcgcaccGCGAGCACAccagcuacucGCCggaGCGCu -3'
miRNA:   3'- aCGACGUGa------------UGCUCGUGU----------UGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 61334 0.75 0.454475
Target:  5'- cGCUGCAgCgcgGCGAcCACGGCgUGCGCu -3'
miRNA:   3'- aCGACGU-Ga--UGCUcGUGUUGgACGCG- -5'
6348 3' -54.2 NC_001847.1 + 97827 0.8 0.268914
Target:  5'- cGCUGUGCUcgGCGcGCGCGGgCUGCGCg -3'
miRNA:   3'- aCGACGUGA--UGCuCGUGUUgGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 132186 0.74 0.51318
Target:  5'- cGCUGCGCgcCGAG-GCGGCCgccGCGCu -3'
miRNA:   3'- aCGACGUGauGCUCgUGUUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 88147 0.8 0.268257
Target:  5'- gGC-GCGCUucGCGAGCcccaaguACAGCCUGCGCc -3'
miRNA:   3'- aCGaCGUGA--UGCUCG-------UGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 18565 0.75 0.464015
Target:  5'- cGCUGCGCccaGAGCGCAgauGCCcacgUGCGCc -3'
miRNA:   3'- aCGACGUGaugCUCGUGU---UGG----ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 53360 0.74 0.503166
Target:  5'- cGCUGCugGCggccGCGGGCACcGCgaGCGCg -3'
miRNA:   3'- aCGACG--UGa---UGCUCGUGuUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 49889 0.76 0.430183
Target:  5'- cUGCUGCACggcACGuGCugGGCCcggccgcgguggcgcUGCGCg -3'
miRNA:   3'- -ACGACGUGa--UGCuCGugUUGG---------------ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 85161 0.76 0.408451
Target:  5'- gGCUccucuCGCggaggGCGuGCACGGCCUGCGCg -3'
miRNA:   3'- aCGAc----GUGa----UGCuCGUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 18511 0.77 0.373797
Target:  5'- gGCUGCcgaggccagcGCUGCGGGCGCGccGCCguccGCGCc -3'
miRNA:   3'- aCGACG----------UGAUGCUCGUGU--UGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 58781 0.78 0.349148
Target:  5'- gUGCUGCAgCUACG-GCAgGaacggacagcGCCUGCGCc -3'
miRNA:   3'- -ACGACGU-GAUGCuCGUgU----------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 28663 0.73 0.564351
Target:  5'- uUGC-GCGCU-CGucGCACGACgUGCGCg -3'
miRNA:   3'- -ACGaCGUGAuGCu-CGUGUUGgACGCG- -5'
6348 3' -54.2 NC_001847.1 + 6893 0.73 0.55399
Target:  5'- aGCaGUGCgucgGCGAGCGCGcgcgcgcCCUGCGCg -3'
miRNA:   3'- aCGaCGUGa---UGCUCGUGUu------GGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 106087 0.74 0.533446
Target:  5'- cGCcGCGCggccgGCGAGCACGGC--GCGCa -3'
miRNA:   3'- aCGaCGUGa----UGCUCGUGUUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 94635 0.74 0.522263
Target:  5'- aGCUGCucaaaacACU-CGAGUACGGCCUGCcCg -3'
miRNA:   3'- aCGACG-------UGAuGCUCGUGUUGGACGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.