miRNA display CGI


Results 81 - 100 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 16093 0.67 0.806109
Target:  5'- cGCGCGCGugccGGCGUaccgcuucccacagcGugCGCCCCa---- -3'
miRNA:   3'- -CGCGCGU----CUGCA---------------CugGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 1747 0.67 0.802553
Target:  5'- cGCGCGCAGAgGUacuccACCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUgCAc----UGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 28482 0.67 0.802553
Target:  5'- cGCGcCGCGGACGccgcgGcGCCGCCgCUAg-- -3'
miRNA:   3'- -CGC-GCGUCUGCa----C-UGGCGGgGAUaac -5'
6348 5' -56.6 NC_001847.1 + 30791 0.67 0.802553
Target:  5'- cGgGCGCGGACGccGCCGCgUCUGc-- -3'
miRNA:   3'- -CgCGCGUCUGCacUGGCGgGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 104560 0.67 0.802553
Target:  5'- cGCGCGCAGAgGUacuccACCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUgCAc----UGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 77134 0.67 0.802553
Target:  5'- gGCGCGC--GCGcGACCGCCgCCg---- -3'
miRNA:   3'- -CGCGCGucUGCaCUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 60656 0.67 0.802553
Target:  5'- uGCGCGCGGcCGcGuCCGCgCCCUc--- -3'
miRNA:   3'- -CGCGCGUCuGCaCuGGCG-GGGAuaac -5'
6348 5' -56.6 NC_001847.1 + 52648 0.67 0.801661
Target:  5'- cGCGC-CAGACGcGACCuacgccuucggcgGCCCCg--UGg -3'
miRNA:   3'- -CGCGcGUCUGCaCUGG-------------CGGGGauaAC- -5'
6348 5' -56.6 NC_001847.1 + 131267 0.68 0.793558
Target:  5'- gGCGcCGCGcGACG-GGCCGCCgCCg---- -3'
miRNA:   3'- -CGC-GCGU-CUGCaCUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 33015 0.68 0.793558
Target:  5'- uCGCGCGGA-GUGccGCCGCCCUc---- -3'
miRNA:   3'- cGCGCGUCUgCAC--UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 43246 0.68 0.793558
Target:  5'- gGCGCGCGGGCGgcGCgGCgCCCg---- -3'
miRNA:   3'- -CGCGCGUCUGCacUGgCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 83721 0.68 0.793558
Target:  5'- cGCGCGCGGGCGgcuccgucUGcGCCGCCgCa---- -3'
miRNA:   3'- -CGCGCGUCUGC--------AC-UGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 41806 0.68 0.793558
Target:  5'- cGCGCGCuacgaGGACGUGGCgcgggauuggCGCgCCUAc-- -3'
miRNA:   3'- -CGCGCG-----UCUGCACUG----------GCGgGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 28454 0.68 0.793558
Target:  5'- gGCGcCGCGcGACG-GGCCGCCgCCg---- -3'
miRNA:   3'- -CGC-GCGU-CUGCaCUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 5886 0.68 0.793558
Target:  5'- uGCGCGCAGG-GcGGCCGCgCCgucgcagAUUGu -3'
miRNA:   3'- -CGCGCGUCUgCaCUGGCGgGGa------UAAC- -5'
6348 5' -56.6 NC_001847.1 + 6359 0.68 0.793558
Target:  5'- cGCGcCGCGGGCGUaGCCGCUgCg---- -3'
miRNA:   3'- -CGC-GCGUCUGCAcUGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 70645 0.68 0.784417
Target:  5'- cGCGgGCuggauGACGUGGCCGCgcaUCUGcUGg -3'
miRNA:   3'- -CGCgCGu----CUGCACUGGCGg--GGAUaAC- -5'
6348 5' -56.6 NC_001847.1 + 113629 0.68 0.784417
Target:  5'- cGCGCGCAGGCGc-GCCuuGCCUCUc--- -3'
miRNA:   3'- -CGCGCGUCUGCacUGG--CGGGGAuaac -5'
6348 5' -56.6 NC_001847.1 + 127253 0.68 0.784417
Target:  5'- cGCGCGCcccgcgcggcuaGGugGUuuuguggcGGCCGCCUCUGc-- -3'
miRNA:   3'- -CGCGCG------------UCugCA--------CUGGCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 3726 0.68 0.784417
Target:  5'- cCGCGUAGcGCGcGGCCGCCUCg---- -3'
miRNA:   3'- cGCGCGUC-UGCaCUGGCGGGGauaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.