miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 132930 0.67 0.828579
Target:  5'- cGCgGCGCuGGCGgccuacuGCCGCCCCg---- -3'
miRNA:   3'- -CG-CGCGuCUGCac-----UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 92202 0.67 0.828579
Target:  5'- cGCGCGCGG-CGUcGGCCGCUUg----- -3'
miRNA:   3'- -CGCGCGUCuGCA-CUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 35938 0.67 0.828579
Target:  5'- gGCGCGCcgccGCGcGGCCGCCUCg---- -3'
miRNA:   3'- -CGCGCGuc--UGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 47350 0.67 0.828579
Target:  5'- cCGCGUcgaAGACGcggaagaGGCCGCCCCg---- -3'
miRNA:   3'- cGCGCG---UCUGCa------CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 30117 0.67 0.828579
Target:  5'- cGCgGCGCuGGCGgccuacuGCCGCCCCg---- -3'
miRNA:   3'- -CG-CGCGuCUGCac-----UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 115477 0.67 0.820072
Target:  5'- cCGCGCGGGCacgucugGGCuUGCCCCUGg-- -3'
miRNA:   3'- cGCGCGUCUGca-----CUG-GCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 113527 0.67 0.820072
Target:  5'- uUGCGCAGACGUcGuCUGCCuCCa---- -3'
miRNA:   3'- cGCGCGUCUGCA-CuGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 120938 0.67 0.820072
Target:  5'- gGCGCGCGGGCGUGGUgGCUgaUGUg- -3'
miRNA:   3'- -CGCGCGUCUGCACUGgCGGggAUAac -5'
6348 5' -56.6 NC_001847.1 + 28240 0.67 0.820072
Target:  5'- aGCGCGUGGugGUGGagugggccUCGCUCUUuUUGg -3'
miRNA:   3'- -CGCGCGUCugCACU--------GGCGGGGAuAAC- -5'
6348 5' -56.6 NC_001847.1 + 73639 0.67 0.820072
Target:  5'- uGCGCGCuguuucaggAGGCGUacCCGCCgCUGUg- -3'
miRNA:   3'- -CGCGCG---------UCUGCAcuGGCGGgGAUAac -5'
6348 5' -56.6 NC_001847.1 + 77252 0.67 0.820072
Target:  5'- uCGCGCGGGCGcUGGCgggCGacaCCCUcgUGg -3'
miRNA:   3'- cGCGCGUCUGC-ACUG---GCg--GGGAuaAC- -5'
6348 5' -56.6 NC_001847.1 + 107512 0.67 0.820072
Target:  5'- aGCGCgagugccgaGCGGACGaggaacgaUGGCCGCgCCUAa-- -3'
miRNA:   3'- -CGCG---------CGUCUGC--------ACUGGCGgGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 74985 0.67 0.820072
Target:  5'- cGCuCGCGGGCGUGGCgCaCCCCg---- -3'
miRNA:   3'- -CGcGCGUCUGCACUG-GcGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 62204 0.67 0.817486
Target:  5'- cGCGUGCGGcuGCGUGagcguaaacccgacGCCGCCgaccgCCUcgUGg -3'
miRNA:   3'- -CGCGCGUC--UGCAC--------------UGGCGG-----GGAuaAC- -5'
6348 5' -56.6 NC_001847.1 + 111324 0.67 0.814885
Target:  5'- cGCGCGCuGGACcgcgagcaguggucgGUGGCCGCCgCg---- -3'
miRNA:   3'- -CGCGCG-UCUG---------------CACUGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 104454 0.67 0.811394
Target:  5'- gGCGCGCAGguacACGUGcGCCuGCCCg----- -3'
miRNA:   3'- -CGCGCGUC----UGCAC-UGG-CGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 17810 0.67 0.811394
Target:  5'- cGCG-GgGGGCGaGGCCGCCCCc---- -3'
miRNA:   3'- -CGCgCgUCUGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 75732 0.67 0.811394
Target:  5'- gGgGCGCAG-CGaUGACCGCCgCg---- -3'
miRNA:   3'- -CgCGCGUCuGC-ACUGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 1641 0.67 0.811394
Target:  5'- gGCGCGCAGguacACGUGcGCCuGCCCg----- -3'
miRNA:   3'- -CGCGCGUC----UGCAC-UGG-CGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 128643 0.67 0.811394
Target:  5'- aGCGCGCcGGCGacGCCGCUaCCUAc-- -3'
miRNA:   3'- -CGCGCGuCUGCacUGGCGG-GGAUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.