miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 30329 0.66 0.852995
Target:  5'- uGCGCGUGGugGUGcucuacgacccGCUGCCCg----- -3'
miRNA:   3'- -CGCGCGUCugCAC-----------UGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 132222 0.66 0.845047
Target:  5'- cCGCGCuGGCGgcgcgGACCgugGCCCCg---- -3'
miRNA:   3'- cGCGCGuCUGCa----CUGG---CGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 16687 0.66 0.845047
Target:  5'- uGCGcCGCAGGCacgaGGCCGCCaCCa---- -3'
miRNA:   3'- -CGC-GCGUCUGca--CUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 91046 0.66 0.845047
Target:  5'- uGCGCGCAGGCGgcgGGCgcagaCGCCgCa---- -3'
miRNA:   3'- -CGCGCGUCUGCa--CUG-----GCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 96022 0.66 0.845047
Target:  5'- -aGCGCGGcGCGUcGGCCGCCgC-GUUGc -3'
miRNA:   3'- cgCGCGUC-UGCA-CUGGCGGgGaUAAC- -5'
6348 5' -56.6 NC_001847.1 + 83471 0.66 0.845047
Target:  5'- gGCGCGC--GCGUacGCCGC-CCUGUUGc -3'
miRNA:   3'- -CGCGCGucUGCAc-UGGCGgGGAUAAC- -5'
6348 5' -56.6 NC_001847.1 + 17559 0.66 0.845047
Target:  5'- -gGCGCAGACGUuuuGGCCgggcagcgcGCCCCc---- -3'
miRNA:   3'- cgCGCGUCUGCA---CUGG---------CGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 44598 0.66 0.845047
Target:  5'- cGCGCGCGG-CGagGGCCGCCa------ -3'
miRNA:   3'- -CGCGCGUCuGCa-CUGGCGGggauaac -5'
6348 5' -56.6 NC_001847.1 + 29409 0.66 0.845047
Target:  5'- cCGCGCuGGCGgcgcgGACCgugGCCCCg---- -3'
miRNA:   3'- cGCGCGuCUGCa----CUGG---CGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 10422 0.67 0.836906
Target:  5'- cCGCGCGGuucGCGcuGCCGCCCCc---- -3'
miRNA:   3'- cGCGCGUC---UGCacUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 87842 0.67 0.836906
Target:  5'- aCGCcgGCGGGCGUGAUgGCCCg----- -3'
miRNA:   3'- cGCG--CGUCUGCACUGgCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 2070 0.67 0.836906
Target:  5'- cGCaGCGguGGCGgcGAgCGCCCCg---- -3'
miRNA:   3'- -CG-CGCguCUGCa-CUgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 115915 0.67 0.836906
Target:  5'- uCGCGCAGGCGcUGGCUGUCgCa---- -3'
miRNA:   3'- cGCGCGUCUGC-ACUGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 33408 0.67 0.836906
Target:  5'- cCGUGCugaguGACGUGGCCGCCa------ -3'
miRNA:   3'- cGCGCGu----CUGCACUGGCGGggauaac -5'
6348 5' -56.6 NC_001847.1 + 114904 0.67 0.836906
Target:  5'- cGCGCGCGGGgGcGA--GCCCCUGg-- -3'
miRNA:   3'- -CGCGCGUCUgCaCUggCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 38149 0.67 0.836906
Target:  5'- uCGCGCGG-CGc-GCCGCCCCg---- -3'
miRNA:   3'- cGCGCGUCuGCacUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 104883 0.67 0.836906
Target:  5'- cGCaGCGguGGCGgcGAgCGCCCCg---- -3'
miRNA:   3'- -CG-CGCguCUGCa-CUgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 83511 0.67 0.836082
Target:  5'- gGCGCugcgugccuuccuGCGGucCGUGcGCCGCCCCggggUGg -3'
miRNA:   3'- -CGCG-------------CGUCu-GCAC-UGGCGGGGaua-AC- -5'
6348 5' -56.6 NC_001847.1 + 92202 0.67 0.828579
Target:  5'- cGCGCGCGG-CGUcGGCCGCUUg----- -3'
miRNA:   3'- -CGCGCGUCuGCA-CUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 47350 0.67 0.828579
Target:  5'- cCGCGUcgaAGACGcggaagaGGCCGCCCCg---- -3'
miRNA:   3'- cGCGCG---UCUGCa------CUGGCGGGGauaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.