miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 56011 0.66 0.871239
Target:  5'- uGCGCaGCGGGCGcaaggugguggccuuUGACCGCgacgacgacCCCUGg-- -3'
miRNA:   3'- -CGCG-CGUCUGC---------------ACUGGCG---------GGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 60649 0.66 0.868282
Target:  5'- cGCgGCGCAGGCGcGGCUGCUgCa---- -3'
miRNA:   3'- -CG-CGCGUCUGCaCUGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 54398 0.66 0.868282
Target:  5'- cGCGgGCgAGGCGggcGCCGCCgCgGUUGg -3'
miRNA:   3'- -CGCgCG-UCUGCac-UGGCGGgGaUAAC- -5'
6348 5' -56.6 NC_001847.1 + 73202 0.66 0.868282
Target:  5'- cCGCGCGGGCcgcGCCGCCgCUGa-- -3'
miRNA:   3'- cGCGCGUCUGcacUGGCGGgGAUaac -5'
6348 5' -56.6 NC_001847.1 + 66174 0.66 0.868282
Target:  5'- cCGgGCuGGCGccGGCCGCCCCc---- -3'
miRNA:   3'- cGCgCGuCUGCa-CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 49971 0.66 0.868282
Target:  5'- aCGCGCAGGcCGUG-CaCGCCCUc---- -3'
miRNA:   3'- cGCGCGUCU-GCACuG-GCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 96045 0.66 0.860742
Target:  5'- uCGCGCAG-CGUG-UCGUCCCg---- -3'
miRNA:   3'- cGCGCGUCuGCACuGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 116613 0.66 0.860742
Target:  5'- uGCgGCGCGGACGgcGGCgCGCCCg----- -3'
miRNA:   3'- -CG-CGCGUCUGCa-CUG-GCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 9089 0.66 0.860742
Target:  5'- cGCGCGCGGG-GUG-CCGCUCUc---- -3'
miRNA:   3'- -CGCGCGUCUgCACuGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 89512 0.66 0.860742
Target:  5'- uGCuGCGCAG-CGaGGcCCGCCCCa---- -3'
miRNA:   3'- -CG-CGCGUCuGCaCU-GGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 25122 0.66 0.852995
Target:  5'- cGCGCGaccuccGugGUGAUCGCCuCCa---- -3'
miRNA:   3'- -CGCGCgu----CugCACUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 22218 0.66 0.852995
Target:  5'- aCGCGUccguGGGCGUGG-CGCCCgUGUa- -3'
miRNA:   3'- cGCGCG----UCUGCACUgGCGGGgAUAac -5'
6348 5' -56.6 NC_001847.1 + 98625 0.66 0.852995
Target:  5'- uCGCGCAG-CGUGcacACCGCCgCUu--- -3'
miRNA:   3'- cGCGCGUCuGCAC---UGGCGGgGAuaac -5'
6348 5' -56.6 NC_001847.1 + 105766 0.66 0.852995
Target:  5'- cGCGCGCGGcaGCuccGGCCGCCCg----- -3'
miRNA:   3'- -CGCGCGUC--UGca-CUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 134866 0.66 0.852995
Target:  5'- cCGCGCGGGCucGGCgGCCCCc---- -3'
miRNA:   3'- cGCGCGUCUGcaCUGgCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 30329 0.66 0.852995
Target:  5'- uGCGCGUGGugGUGcucuacgacccGCUGCCCg----- -3'
miRNA:   3'- -CGCGCGUCugCAC-----------UGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 32053 0.66 0.852995
Target:  5'- cCGCGCGGGCucGGCgGCCCCc---- -3'
miRNA:   3'- cGCGCGUCUGcaCUGgCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 133142 0.66 0.852995
Target:  5'- uGCGCGUGGugGUGcucuacgacccGCUGCCCg----- -3'
miRNA:   3'- -CGCGCGUCugCAC-----------UGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 81874 0.66 0.852995
Target:  5'- cGCGCGCcuGGGCGcGcAgCGCCCCg---- -3'
miRNA:   3'- -CGCGCG--UCUGCaC-UgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 125031 0.66 0.852995
Target:  5'- aCGCGUccguGGGCGUGG-CGCCCgUGUa- -3'
miRNA:   3'- cGCGCG----UCUGCACUgGCGGGgAUAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.