miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 53948 0.72 0.534624
Target:  5'- uGUGCGCgAGGCG--GCCGCCUCUGUg- -3'
miRNA:   3'- -CGCGCG-UCUGCacUGGCGGGGAUAac -5'
6348 5' -56.6 NC_001847.1 + 13123 0.72 0.534624
Target:  5'- gGCGCGCGGGCGgcGCCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUGCacUGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 43724 0.72 0.534624
Target:  5'- uGCGCGCGGACGUGGuggCGCaCUCUGc-- -3'
miRNA:   3'- -CGCGCGUCUGCACUg--GCG-GGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 69099 0.72 0.534624
Target:  5'- cGCGCGCGGACGggcgGGCCGCgUUCUc--- -3'
miRNA:   3'- -CGCGCGUCUGCa---CUGGCG-GGGAuaac -5'
6348 5' -56.6 NC_001847.1 + 62727 0.72 0.534624
Target:  5'- cGCGuUGCGGcCGUGGCCGUCCCc---- -3'
miRNA:   3'- -CGC-GCGUCuGCACUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 86634 0.72 0.554571
Target:  5'- aGCGUGUGGGCGggccgcGCCGCCCCg---- -3'
miRNA:   3'- -CGCGCGUCUGCac----UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 30729 0.72 0.554571
Target:  5'- cCGCGCGGACGUGGCCGa--CUGg-- -3'
miRNA:   3'- cGCGCGUCUGCACUGGCgggGAUaac -5'
6348 5' -56.6 NC_001847.1 + 77116 0.72 0.564627
Target:  5'- uCGCcaGCAG-CG-GGCCGCCCUUGUUGc -3'
miRNA:   3'- cGCG--CGUCuGCaCUGGCGGGGAUAAC- -5'
6348 5' -56.6 NC_001847.1 + 54053 0.72 0.564627
Target:  5'- gGCGCGCGG-CGaGGCCGCCgCCa---- -3'
miRNA:   3'- -CGCGCGUCuGCaCUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 4521 0.72 0.564627
Target:  5'- cGUGCGCAcGACGUGccucgcggcgGCCGCCCgCgggUGg -3'
miRNA:   3'- -CGCGCGU-CUGCAC----------UGGCGGG-GauaAC- -5'
6348 5' -56.6 NC_001847.1 + 46836 0.72 0.564627
Target:  5'- aGCGCGCAaaaGUcGACCGCCCCc---- -3'
miRNA:   3'- -CGCGCGUcugCA-CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 130537 0.71 0.574731
Target:  5'- aGCGCuGCGacGACGUGGCCGCCUUc---- -3'
miRNA:   3'- -CGCG-CGU--CUGCACUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 87406 0.71 0.574731
Target:  5'- uGCGCGCGGGCGgGGCCccGCCCg----- -3'
miRNA:   3'- -CGCGCGUCUGCaCUGG--CGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 77540 0.71 0.574731
Target:  5'- aGCGCGaGGGCGUGG-CGCaCCCUcgUGc -3'
miRNA:   3'- -CGCGCgUCUGCACUgGCG-GGGAuaAC- -5'
6348 5' -56.6 NC_001847.1 + 65518 0.71 0.584876
Target:  5'- cGCGCGCAG-UGcGGCCGCCCg----- -3'
miRNA:   3'- -CGCGCGUCuGCaCUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 133179 0.71 0.595054
Target:  5'- cUGCGCGGGCGcgGGCUGCCCUc---- -3'
miRNA:   3'- cGCGCGUCUGCa-CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 1124 0.71 0.595054
Target:  5'- uGCGaCGCuGGCGaGACCGCCCgUGa-- -3'
miRNA:   3'- -CGC-GCGuCUGCaCUGGCGGGgAUaac -5'
6348 5' -56.6 NC_001847.1 + 84245 0.71 0.60526
Target:  5'- cCGCGCGGuACGUGGCCugcaugauGCUCCUGg-- -3'
miRNA:   3'- cGCGCGUC-UGCACUGG--------CGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 13935 0.71 0.60526
Target:  5'- cGCGCcgcgGCAGGgG-GGCCGCCCCg---- -3'
miRNA:   3'- -CGCG----CGUCUgCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 15556 0.71 0.60526
Target:  5'- cGCGCGCGGcCGUcgggccgcGGCCGCCgCUGc-- -3'
miRNA:   3'- -CGCGCGUCuGCA--------CUGGCGGgGAUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.