miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 14451 0.68 0.775139
Target:  5'- aGCGCGCGGccgcgcugcucgGCGUGcgcuccaacGCCGUCCCg---- -3'
miRNA:   3'- -CGCGCGUC------------UGCAC---------UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 14906 0.73 0.48598
Target:  5'- cGCGCGCAGGCc-GACUGCCUCg---- -3'
miRNA:   3'- -CGCGCGUCUGcaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 15048 0.68 0.765733
Target:  5'- aCGCGCGGGCGcuuuaucucCCGCCCCg---- -3'
miRNA:   3'- cGCGCGUCUGCacu------GGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 15305 0.7 0.646209
Target:  5'- uGCGCGCGGGCGUG-CgCGaCCCgUAc-- -3'
miRNA:   3'- -CGCGCGUCUGCACuG-GC-GGGgAUaac -5'
6348 5' -56.6 NC_001847.1 + 15556 0.71 0.60526
Target:  5'- cGCGCGCGGcCGUcgggccgcGGCCGCCgCUGc-- -3'
miRNA:   3'- -CGCGCGUCuGCA--------CUGGCGGgGAUaac -5'
6348 5' -56.6 NC_001847.1 + 16093 0.67 0.806109
Target:  5'- cGCGCGCGugccGGCGUaccgcuucccacagcGugCGCCCCa---- -3'
miRNA:   3'- -CGCGCGU----CUGCA---------------CugGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 16687 0.66 0.845047
Target:  5'- uGCGcCGCAGGCacgaGGCCGCCaCCa---- -3'
miRNA:   3'- -CGC-GCGUCUGca--CUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 17015 0.68 0.756207
Target:  5'- cGCGCcucGCAGACGgccucGCCGCCCUc---- -3'
miRNA:   3'- -CGCG---CGUCUGCac---UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 17559 0.66 0.845047
Target:  5'- -gGCGCAGACGUuuuGGCCgggcagcgcGCCCCc---- -3'
miRNA:   3'- cgCGCGUCUGCA---CUGG---------CGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 17810 0.67 0.811394
Target:  5'- cGCG-GgGGGCGaGGCCGCCCCc---- -3'
miRNA:   3'- -CGCgCgUCUGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 19360 0.68 0.746572
Target:  5'- uGCGCGCGcccGACGguggccagGGCCGCCgCCa---- -3'
miRNA:   3'- -CGCGCGU---CUGCa-------CUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 21357 0.69 0.686975
Target:  5'- uGCGCGCcgucGGCGgcucgGGCCGCCUCg---- -3'
miRNA:   3'- -CGCGCGu---CUGCa----CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 21754 0.68 0.756207
Target:  5'- cGCGCGCGGGgG-GGCCGCCg------ -3'
miRNA:   3'- -CGCGCGUCUgCaCUGGCGGggauaac -5'
6348 5' -56.6 NC_001847.1 + 22218 0.66 0.852995
Target:  5'- aCGCGUccguGGGCGUGG-CGCCCgUGUa- -3'
miRNA:   3'- cGCGCG----UCUGCACUgGCGGGgAUAac -5'
6348 5' -56.6 NC_001847.1 + 25122 0.66 0.852995
Target:  5'- cGCGCGaccuccGugGUGAUCGCCuCCa---- -3'
miRNA:   3'- -CGCGCgu----CugCACUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 27699 0.69 0.717101
Target:  5'- gGCGCGCGagcgccGGCG-GGCCGCCCg----- -3'
miRNA:   3'- -CGCGCGU------CUGCaCUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 28009 0.7 0.656438
Target:  5'- aGCGCGCGG-CGUG-CCGCgCUUAc-- -3'
miRNA:   3'- -CGCGCGUCuGCACuGGCGgGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 28240 0.67 0.820072
Target:  5'- aGCGCGUGGugGUGGagugggccUCGCUCUUuUUGg -3'
miRNA:   3'- -CGCGCGUCugCACU--------GGCGGGGAuAAC- -5'
6348 5' -56.6 NC_001847.1 + 28454 0.68 0.793558
Target:  5'- gGCGcCGCGcGACG-GGCCGCCgCCg---- -3'
miRNA:   3'- -CGC-GCGU-CUGCaCUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 28482 0.67 0.802553
Target:  5'- cGCGcCGCGGACGccgcgGcGCCGCCgCUAg-- -3'
miRNA:   3'- -CGC-GCGUCUGCa----C-UGGCGGgGAUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.