miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 124567 0.68 0.756207
Target:  5'- cGCGCGCGGGgG-GGCCGCCg------ -3'
miRNA:   3'- -CGCGCGUCUgCaCUGGCGGggauaac -5'
6348 5' -56.6 NC_001847.1 + 122397 0.68 0.765733
Target:  5'- uGCGCGaagaAGGCGcugGGCCGCaCCCg---- -3'
miRNA:   3'- -CGCGCg---UCUGCa--CUGGCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 121650 0.7 0.646209
Target:  5'- gGCGCGCAcuucGCGgaaGGCCGCCgCUGUg- -3'
miRNA:   3'- -CGCGCGUc---UGCa--CUGGCGGgGAUAac -5'
6348 5' -56.6 NC_001847.1 + 120938 0.67 0.820072
Target:  5'- gGCGCGCGGGCGUGGUgGCUgaUGUg- -3'
miRNA:   3'- -CGCGCGUCUGCACUGgCGGggAUAac -5'
6348 5' -56.6 NC_001847.1 + 119891 0.68 0.765733
Target:  5'- gGCGauCGCGuGCGUGGCCGCCgCCg---- -3'
miRNA:   3'- -CGC--GCGUcUGCACUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 117410 0.69 0.717101
Target:  5'- uGCGCGCGGuggacgcuucGCGcGGCUGCgCCCUGg-- -3'
miRNA:   3'- -CGCGCGUC----------UGCaCUGGCG-GGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 117403 0.73 0.505203
Target:  5'- aGCGCGaGGcCGUGGCCGCCUCg---- -3'
miRNA:   3'- -CGCGCgUCuGCACUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 116613 0.66 0.860742
Target:  5'- uGCgGCGCGGACGgcGGCgCGCCCg----- -3'
miRNA:   3'- -CG-CGCGUCUGCa-CUG-GCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 116343 0.68 0.756207
Target:  5'- cGCGCGCuGGCGcGcGCCGCCgCCg---- -3'
miRNA:   3'- -CGCGCGuCUGCaC-UGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 115915 0.67 0.836906
Target:  5'- uCGCGCAGGCGcUGGCUGUCgCa---- -3'
miRNA:   3'- cGCGCGUCUGC-ACUGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 115517 0.68 0.775139
Target:  5'- cGCGCGCcGACGccGgCGCCCCg---- -3'
miRNA:   3'- -CGCGCGuCUGCacUgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 115477 0.67 0.820072
Target:  5'- cCGCGCGGGCacgucugGGCuUGCCCCUGg-- -3'
miRNA:   3'- cGCGCGUCUGca-----CUG-GCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 115107 0.7 0.655416
Target:  5'- cCGCGCccaGGGCGgcGGCCGCagggccgCCCUAUUGg -3'
miRNA:   3'- cGCGCG---UCUGCa-CUGGCG-------GGGAUAAC- -5'
6348 5' -56.6 NC_001847.1 + 114904 0.67 0.836906
Target:  5'- cGCGCGCGGGgGcGA--GCCCCUGg-- -3'
miRNA:   3'- -CGCGCGUCUgCaCUggCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 113629 0.68 0.784417
Target:  5'- cGCGCGCAGGCGc-GCCuuGCCUCUc--- -3'
miRNA:   3'- -CGCGCGUCUGCacUGG--CGGGGAuaac -5'
6348 5' -56.6 NC_001847.1 + 113527 0.67 0.820072
Target:  5'- uUGCGCAGACGUcGuCUGCCuCCa---- -3'
miRNA:   3'- cGCGCGUCUGCA-CuGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 113409 0.7 0.656438
Target:  5'- cGCGCGCGGGcCGgcgccgGcCCGCgCCCUGcUGg -3'
miRNA:   3'- -CGCGCGUCU-GCa-----CuGGCG-GGGAUaAC- -5'
6348 5' -56.6 NC_001847.1 + 111324 0.67 0.814885
Target:  5'- cGCGCGCuGGACcgcgagcaguggucgGUGGCCGCCgCg---- -3'
miRNA:   3'- -CGCGCG-UCUG---------------CACUGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 110813 0.74 0.412921
Target:  5'- cGCGCGCGG-CGUGGCgCGCCaCCg---- -3'
miRNA:   3'- -CGCGCGUCuGCACUG-GCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 107678 0.71 0.615486
Target:  5'- gGCGUGCAGucaGUGACgGCgCCUgcgGUUGg -3'
miRNA:   3'- -CGCGCGUCug-CACUGgCGgGGA---UAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.