miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 134866 0.66 0.852995
Target:  5'- cCGCGCGGGCucGGCgGCCCCc---- -3'
miRNA:   3'- cGCGCGUCUGcaCUGgCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 133734 0.7 0.666648
Target:  5'- gGCGCGgGGccGCGUGcCUGCCUgUGUUGu -3'
miRNA:   3'- -CGCGCgUC--UGCACuGGCGGGgAUAAC- -5'
6348 5' -56.6 NC_001847.1 + 133348 0.68 0.765733
Target:  5'- gGCGCGCAgGGCGUGcuGCUGCUCUc---- -3'
miRNA:   3'- -CGCGCGU-CUGCAC--UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 133324 0.71 0.625725
Target:  5'- gGCGCGcCGGACGUGAgCGCgCUCg---- -3'
miRNA:   3'- -CGCGC-GUCUGCACUgGCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 133179 0.71 0.595054
Target:  5'- cUGCGCGGGCGcgGGCUGCCCUc---- -3'
miRNA:   3'- cGCGCGUCUGCa-CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 133142 0.66 0.852995
Target:  5'- uGCGCGUGGugGUGcucuacgacccGCUGCCCg----- -3'
miRNA:   3'- -CGCGCGUCugCAC-----------UGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 132930 0.67 0.828579
Target:  5'- cGCgGCGCuGGCGgccuacuGCCGCCCCg---- -3'
miRNA:   3'- -CG-CGCGuCUGCac-----UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 132222 0.66 0.845047
Target:  5'- cCGCGCuGGCGgcgcgGACCgugGCCCCg---- -3'
miRNA:   3'- cGCGCGuCUGCa----CUGG---CGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 132116 1.11 0.001766
Target:  5'- gGCGCGCAGACGUGACCGCCCCUAUUGg -3'
miRNA:   3'- -CGCGCGUCUGCACUGGCGGGGAUAAC- -5'
6348 5' -56.6 NC_001847.1 + 131267 0.68 0.793558
Target:  5'- gGCGcCGCGcGACG-GGCCGCCgCCg---- -3'
miRNA:   3'- -CGC-GCGU-CUGCaCUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 130868 0.69 0.717101
Target:  5'- gGCGCGCGccuCGUGGCCGCCaaagccgaCUGg-- -3'
miRNA:   3'- -CGCGCGUcu-GCACUGGCGGg-------GAUaac -5'
6348 5' -56.6 NC_001847.1 + 130537 0.71 0.574731
Target:  5'- aGCGCuGCGacGACGUGGCCGCCUUc---- -3'
miRNA:   3'- -CGCG-CGU--CUGCACUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 130512 0.69 0.717101
Target:  5'- gGCGCGCGagcgccGGCG-GGCCGCCCg----- -3'
miRNA:   3'- -CGCGCGU------CUGCaCUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 129397 0.74 0.439541
Target:  5'- gGCGCGcCGGACGgcgGugCGuCCCCUGa-- -3'
miRNA:   3'- -CGCGC-GUCUGCa--CugGC-GGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 129243 0.66 0.87561
Target:  5'- cGgGCGCAcaaucugcgacGGCGcGGCCGCCCUg---- -3'
miRNA:   3'- -CgCGCGU-----------CUGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 128643 0.67 0.811394
Target:  5'- aGCGCGCcGGCGacGCCGCUaCCUAc-- -3'
miRNA:   3'- -CGCGCGuCUGCacUGGCGG-GGAUaac -5'
6348 5' -56.6 NC_001847.1 + 127253 0.68 0.784417
Target:  5'- cGCGCGCcccgcgcggcuaGGugGUuuuguggcGGCCGCCUCUGc-- -3'
miRNA:   3'- -CGCGCG------------UCugCA--------CUGGCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 127010 0.67 0.828579
Target:  5'- uCGCGCAGcACc-GcCCGCCCCUGg-- -3'
miRNA:   3'- cGCGCGUC-UGcaCuGGCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 125387 0.7 0.670724
Target:  5'- gGCGCGCGaggucgagguggaccGACGgcGACUGCCCCg---- -3'
miRNA:   3'- -CGCGCGU---------------CUGCa-CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 125031 0.66 0.852995
Target:  5'- aCGCGUccguGGGCGUGG-CGCCCgUGUa- -3'
miRNA:   3'- cGCGCG----UCUGCACUgGCGGGgAUAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.