miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 61275 0.77 0.282334
Target:  5'- cGCGCGCGGGCGccgcGCCGCCgCCUAg-- -3'
miRNA:   3'- -CGCGCGUCUGCac--UGGCGG-GGAUaac -5'
6348 5' -56.6 NC_001847.1 + 15556 0.71 0.60526
Target:  5'- cGCGCGCGGcCGUcgggccgcGGCCGCCgCUGc-- -3'
miRNA:   3'- -CGCGCGUCuGCA--------CUGGCGGgGAUaac -5'
6348 5' -56.6 NC_001847.1 + 78302 0.71 0.615486
Target:  5'- gGUGCuCGGGCGgcugGGCCGCCCCc---- -3'
miRNA:   3'- -CGCGcGUCUGCa---CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 5678 0.66 0.88272
Target:  5'- cGCGCGCGG-CGgcGGCCGCCagcucaaguagCCgcUUGg -3'
miRNA:   3'- -CGCGCGUCuGCa-CUGGCGG-----------GGauAAC- -5'
6348 5' -56.6 NC_001847.1 + 74489 0.74 0.412921
Target:  5'- aGgGCGCGGACGcGGCCGCgcgcaCCCUcgUGc -3'
miRNA:   3'- -CgCGCGUCUGCaCUGGCG-----GGGAuaAC- -5'
6348 5' -56.6 NC_001847.1 + 88547 0.74 0.430558
Target:  5'- uGUGCGCGuGGCGUGACCGCgCUCg---- -3'
miRNA:   3'- -CGCGCGU-CUGCACUGGCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 13123 0.72 0.534624
Target:  5'- gGCGCGCGGGCGgcGCCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUGCacUGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 43724 0.72 0.534624
Target:  5'- uGCGCGCGGACGUGGuggCGCaCUCUGc-- -3'
miRNA:   3'- -CGCGCGUCUGCACUg--GCG-GGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 30729 0.72 0.554571
Target:  5'- cCGCGCGGACGUGGCCGa--CUGg-- -3'
miRNA:   3'- cGCGCGUCUGCACUGGCgggGAUaac -5'
6348 5' -56.6 NC_001847.1 + 1124 0.71 0.595054
Target:  5'- uGCGaCGCuGGCGaGACCGCCCgUGa-- -3'
miRNA:   3'- -CGC-GCGuCUGCaCUGGCGGGgAUaac -5'
6348 5' -56.6 NC_001847.1 + 54053 0.72 0.564627
Target:  5'- gGCGCGCGG-CGaGGCCGCCgCCa---- -3'
miRNA:   3'- -CGCGCGUCuGCaCUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 69099 0.72 0.534624
Target:  5'- cGCGCGCGGACGggcgGGCCGCgUUCUc--- -3'
miRNA:   3'- -CGCGCGUCUGCa---CUGGCG-GGGAuaac -5'
6348 5' -56.6 NC_001847.1 + 48937 0.76 0.331787
Target:  5'- cGgGCGCAGGCGcgcgacugGACCGCCCCc---- -3'
miRNA:   3'- -CgCGCGUCUGCa-------CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 77540 0.71 0.574731
Target:  5'- aGCGCGaGGGCGUGG-CGCaCCCUcgUGc -3'
miRNA:   3'- -CGCGCgUCUGCACUgGCG-GGGAuaAC- -5'
6348 5' -56.6 NC_001847.1 + 33654 0.75 0.362785
Target:  5'- cGCGCGCGcGCGUGGCCGCggCCCg---- -3'
miRNA:   3'- -CGCGCGUcUGCACUGGCG--GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 53948 0.72 0.534624
Target:  5'- uGUGCGCgAGGCG--GCCGCCUCUGUg- -3'
miRNA:   3'- -CGCGCG-UCUGCacUGGCGGGGAUAac -5'
6348 5' -56.6 NC_001847.1 + 87406 0.71 0.574731
Target:  5'- uGCGCGCGGGCGgGGCCccGCCCg----- -3'
miRNA:   3'- -CGCGCGUCUGCaCUGG--CGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 51419 0.71 0.615486
Target:  5'- gGCgGCGCAGACGgaGCCGCCCg----- -3'
miRNA:   3'- -CG-CGCGUCUGCacUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 61023 0.75 0.395737
Target:  5'- cGCGCGUcacauccccGGGCGcGGCCGCCCCg---- -3'
miRNA:   3'- -CGCGCG---------UCUGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 104100 0.74 0.448629
Target:  5'- gGCgGCGCGGugGcUGGCCGCCUCg---- -3'
miRNA:   3'- -CG-CGCGUCugC-ACUGGCGGGGauaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.