Results 21 - 40 of 211 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 69299 | 0.7 | 0.635968 |
Target: 5'- gGCGUGCGGGCG-GACCgGCUgCCUuUUGg -3' miRNA: 3'- -CGCGCGUCUGCaCUGG-CGG-GGAuAAC- -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 78302 | 0.71 | 0.615486 |
Target: 5'- gGUGCuCGGGCGgcugGGCCGCCCCc---- -3' miRNA: 3'- -CGCGcGUCUGCa---CUGGCGGGGauaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 69099 | 0.72 | 0.534624 |
Target: 5'- cGCGCGCGGACGggcgGGCCGCgUUCUc--- -3' miRNA: 3'- -CGCGCGUCUGCa---CUGGCG-GGGAuaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 61023 | 0.75 | 0.395737 |
Target: 5'- cGCGCGUcacauccccGGGCGcGGCCGCCCCg---- -3' miRNA: 3'- -CGCGCG---------UCUGCaCUGGCGGGGauaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 130512 | 0.69 | 0.717101 |
Target: 5'- gGCGCGCGagcgccGGCG-GGCCGCCCg----- -3' miRNA: 3'- -CGCGCGU------CUGCaCUGGCGGGgauaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 36485 | 0.7 | 0.666648 |
Target: 5'- cUGCGCGGgcGCGUGGCgGCCCUUc--- -3' miRNA: 3'- cGCGCGUC--UGCACUGgCGGGGAuaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 15556 | 0.71 | 0.60526 |
Target: 5'- cGCGCGCGGcCGUcgggccgcGGCCGCCgCUGc-- -3' miRNA: 3'- -CGCGCGUCuGCA--------CUGGCGGgGAUaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 33654 | 0.75 | 0.362785 |
Target: 5'- cGCGCGCGcGCGUGGCCGCggCCCg---- -3' miRNA: 3'- -CGCGCGUcUGCACUGGCG--GGGauaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 29427 | 0.7 | 0.666648 |
Target: 5'- uGCGCGCcagcgagcgcugGGGCGUGgcGCCGCCCg----- -3' miRNA: 3'- -CGCGCG------------UCUGCAC--UGGCGGGgauaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 48937 | 0.76 | 0.331787 |
Target: 5'- cGgGCGCAGGCGcgcgacugGACCGCCCCc---- -3' miRNA: 3'- -CgCGCGUCUGCa-------CUGGCGGGGauaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 51419 | 0.71 | 0.615486 |
Target: 5'- gGCgGCGCAGACGgaGCCGCCCg----- -3' miRNA: 3'- -CG-CGCGUCUGCacUGGCGGGgauaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 15305 | 0.7 | 0.646209 |
Target: 5'- uGCGCGCGGGCGUG-CgCGaCCCgUAc-- -3' miRNA: 3'- -CGCGCGUCUGCACuG-GC-GGGgAUaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 77540 | 0.71 | 0.574731 |
Target: 5'- aGCGCGaGGGCGUGG-CGCaCCCUcgUGc -3' miRNA: 3'- -CGCGCgUCUGCACUgGCG-GGGAuaAC- -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 30729 | 0.72 | 0.554571 |
Target: 5'- cCGCGCGGACGUGGCCGa--CUGg-- -3' miRNA: 3'- cGCGCGUCUGCACUGGCgggGAUaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 13123 | 0.72 | 0.534624 |
Target: 5'- gGCGCGCGGGCGgcGCCGCgCCg---- -3' miRNA: 3'- -CGCGCGUCUGCacUGGCGgGGauaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 74489 | 0.74 | 0.412921 |
Target: 5'- aGgGCGCGGACGcGGCCGCgcgcaCCCUcgUGc -3' miRNA: 3'- -CgCGCGUCUGCaCUGGCG-----GGGAuaAC- -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 12911 | 0.68 | 0.746572 |
Target: 5'- gGCG-GCAuGuACGUGGgCGCCCCUGa-- -3' miRNA: 3'- -CGCgCGU-C-UGCACUgGCGGGGAUaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 40779 | 0.69 | 0.72701 |
Target: 5'- cGCGCgGCAGACGccGCCGCgCCa---- -3' miRNA: 3'- -CGCG-CGUCUGCacUGGCGgGGauaac -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 83201 | 0.69 | 0.717101 |
Target: 5'- gGCGCGCAGACGa-GCUuggGCCCgUGUUu -3' miRNA: 3'- -CGCGCGUCUGCacUGG---CGGGgAUAAc -5' |
|||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 45527 | 0.7 | 0.67683 |
Target: 5'- gGCgGCGCGGACGgGGCCGUgCCg---- -3' miRNA: 3'- -CG-CGCGUCUGCaCUGGCGgGGauaac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home