miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 8069 0.69 0.717101
Target:  5'- cGCGCGCAGAgGgggGcACCGCCgCg---- -3'
miRNA:   3'- -CGCGCGUCUgCa--C-UGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 15556 0.71 0.60526
Target:  5'- cGCGCGCGGcCGUcgggccgcGGCCGCCgCUGc-- -3'
miRNA:   3'- -CGCGCGUCuGCA--------CUGGCGGgGAUaac -5'
6348 5' -56.6 NC_001847.1 + 33654 0.75 0.362785
Target:  5'- cGCGCGCGcGCGUGGCCGCggCCCg---- -3'
miRNA:   3'- -CGCGCGUcUGCACUGGCG--GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 117410 0.69 0.717101
Target:  5'- uGCGCGCGGuggacgcuucGCGcGGCUGCgCCCUGg-- -3'
miRNA:   3'- -CGCGCGUC----------UGCaCUGGCG-GGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 48937 0.76 0.331787
Target:  5'- cGgGCGCAGGCGcgcgacugGACCGCCCCc---- -3'
miRNA:   3'- -CgCGCGUCUGCa-------CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 33015 0.68 0.793558
Target:  5'- uCGCGCGGA-GUGccGCCGCCCUc---- -3'
miRNA:   3'- cGCGCGUCUgCAC--UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 74489 0.74 0.412921
Target:  5'- aGgGCGCGGACGcGGCCGCgcgcaCCCUcgUGc -3'
miRNA:   3'- -CgCGCGUCUGCaCUGGCG-----GGGAuaAC- -5'
6348 5' -56.6 NC_001847.1 + 70645 0.68 0.784417
Target:  5'- cGCGgGCuggauGACGUGGCCGCgcaUCUGcUGg -3'
miRNA:   3'- -CGCgCGu----CUGCACUGGCGg--GGAUaAC- -5'
6348 5' -56.6 NC_001847.1 + 79079 0.68 0.781648
Target:  5'- gGCGCGUGcGACGUGugcccgugcgccgcGCCGUgCCUGUg- -3'
miRNA:   3'- -CGCGCGU-CUGCAC--------------UGGCGgGGAUAac -5'
6348 5' -56.6 NC_001847.1 + 119891 0.68 0.765733
Target:  5'- gGCGauCGCGuGCGUGGCCGCCgCCg---- -3'
miRNA:   3'- -CGC--GCGUcUGCACUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 35224 0.68 0.756207
Target:  5'- uGCGCGCGGACGUG-CUGCaggcggCCg---- -3'
miRNA:   3'- -CGCGCGUCUGCACuGGCGg-----GGauaac -5'
6348 5' -56.6 NC_001847.1 + 12911 0.68 0.746572
Target:  5'- gGCG-GCAuGuACGUGGgCGCCCCUGa-- -3'
miRNA:   3'- -CGCgCGU-C-UGCACUgGCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 40779 0.69 0.72701
Target:  5'- cGCGCgGCAGACGccGCCGCgCCa---- -3'
miRNA:   3'- -CGCG-CGUCUGCacUGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 21357 0.69 0.686975
Target:  5'- uGCGCGCcgucGGCGgcucgGGCCGCCUCg---- -3'
miRNA:   3'- -CGCGCGu---CUGCa----CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 29427 0.7 0.666648
Target:  5'- uGCGCGCcagcgagcgcugGGGCGUGgcGCCGCCCg----- -3'
miRNA:   3'- -CGCGCG------------UCUGCAC--UGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 69299 0.7 0.635968
Target:  5'- gGCGUGCGGGCG-GACCgGCUgCCUuUUGg -3'
miRNA:   3'- -CGCGCGUCUGCaCUGG-CGG-GGAuAAC- -5'
6348 5' -56.6 NC_001847.1 + 78302 0.71 0.615486
Target:  5'- gGUGCuCGGGCGgcugGGCCGCCCCc---- -3'
miRNA:   3'- -CGCGcGUCUGCa---CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 77540 0.71 0.574731
Target:  5'- aGCGCGaGGGCGUGG-CGCaCCCUcgUGc -3'
miRNA:   3'- -CGCGCgUCUGCACUgGCG-GGGAuaAC- -5'
6348 5' -56.6 NC_001847.1 + 30729 0.72 0.554571
Target:  5'- cCGCGCGGACGUGGCCGa--CUGg-- -3'
miRNA:   3'- cGCGCGUCUGCACUGGCgggGAUaac -5'
6348 5' -56.6 NC_001847.1 + 13123 0.72 0.534624
Target:  5'- gGCGCGCGGGCGgcGCCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUGCacUGGCGgGGauaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.