miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 29409 0.66 0.845047
Target:  5'- cCGCGCuGGCGgcgcgGACCgugGCCCCg---- -3'
miRNA:   3'- cGCGCGuCUGCa----CUGG---CGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 29427 0.7 0.666648
Target:  5'- uGCGCGCcagcgagcgcugGGGCGUGgcGCCGCCCg----- -3'
miRNA:   3'- -CGCGCG------------UCUGCAC--UGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 30117 0.67 0.828579
Target:  5'- cGCgGCGCuGGCGgccuacuGCCGCCCCg---- -3'
miRNA:   3'- -CG-CGCGuCUGCac-----UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 30329 0.66 0.852995
Target:  5'- uGCGCGUGGugGUGcucuacgacccGCUGCCCg----- -3'
miRNA:   3'- -CGCGCGUCugCAC-----------UGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 30391 0.68 0.775139
Target:  5'- cGgGCGCAGACGgcgcuggcgcUGGCCGCCggcaagCUcgUGg -3'
miRNA:   3'- -CgCGCGUCUGC----------ACUGGCGGg-----GAuaAC- -5'
6348 5' -56.6 NC_001847.1 + 30511 0.71 0.625725
Target:  5'- gGCGCGcCGGACGUGAgCGCgCUCg---- -3'
miRNA:   3'- -CGCGC-GUCUGCACUgGCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 30535 0.68 0.765733
Target:  5'- gGCGCGCAgGGCGUGcuGCUGCUCUc---- -3'
miRNA:   3'- -CGCGCGU-CUGCAC--UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 30729 0.72 0.554571
Target:  5'- cCGCGCGGACGUGGCCGa--CUGg-- -3'
miRNA:   3'- cGCGCGUCUGCACUGGCgggGAUaac -5'
6348 5' -56.6 NC_001847.1 + 30791 0.67 0.802553
Target:  5'- cGgGCGCGGACGccGCCGCgUCUGc-- -3'
miRNA:   3'- -CgCGCGUCUGCacUGGCGgGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 32053 0.66 0.852995
Target:  5'- cCGCGCGGGCucGGCgGCCCCc---- -3'
miRNA:   3'- cGCGCGUCUGcaCUGgCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 32390 0.66 0.88272
Target:  5'- cGCGCGCAcGCGgcacGA-CGCCCCg---- -3'
miRNA:   3'- -CGCGCGUcUGCa---CUgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 32828 0.69 0.717101
Target:  5'- aGCGCGCgAGgcccGCGUGGCCGCCg------ -3'
miRNA:   3'- -CGCGCG-UC----UGCACUGGCGGggauaac -5'
6348 5' -56.6 NC_001847.1 + 33015 0.68 0.793558
Target:  5'- uCGCGCGGA-GUGccGCCGCCCUc---- -3'
miRNA:   3'- cGCGCGUCUgCAC--UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 33336 0.68 0.765733
Target:  5'- gGCGCGCu-GCGUGACgguggGCCCCUc--- -3'
miRNA:   3'- -CGCGCGucUGCACUGg----CGGGGAuaac -5'
6348 5' -56.6 NC_001847.1 + 33408 0.67 0.836906
Target:  5'- cCGUGCugaguGACGUGGCCGCCa------ -3'
miRNA:   3'- cGCGCGu----CUGCACUGGCGGggauaac -5'
6348 5' -56.6 NC_001847.1 + 33654 0.75 0.362785
Target:  5'- cGCGCGCGcGCGUGGCCGCggCCCg---- -3'
miRNA:   3'- -CGCGCGUcUGCACUGGCG--GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 33901 0.68 0.765733
Target:  5'- gGC-CGCGGGCGUgcagGACCGCCUgUGg-- -3'
miRNA:   3'- -CGcGCGUCUGCA----CUGGCGGGgAUaac -5'
6348 5' -56.6 NC_001847.1 + 35224 0.68 0.756207
Target:  5'- uGCGCGCGGACGUG-CUGCaggcggCCg---- -3'
miRNA:   3'- -CGCGCGUCUGCACuGGCGg-----GGauaac -5'
6348 5' -56.6 NC_001847.1 + 35938 0.67 0.828579
Target:  5'- gGCGCGCcgccGCGcGGCCGCCUCg---- -3'
miRNA:   3'- -CGCGCGuc--UGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 36417 0.66 0.87561
Target:  5'- cGCGCGCAGACccugcGACgCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUGca---CUG-GCGgGGauaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.