miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 89512 0.66 0.860742
Target:  5'- uGCuGCGCAG-CGaGGcCCGCCCCa---- -3'
miRNA:   3'- -CG-CGCGUCuGCaCU-GGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 44598 0.66 0.845047
Target:  5'- cGCGCGCGG-CGagGGCCGCCa------ -3'
miRNA:   3'- -CGCGCGUCuGCa-CUGGCGGggauaac -5'
6348 5' -56.6 NC_001847.1 + 30329 0.66 0.852995
Target:  5'- uGCGCGUGGugGUGcucuacgacccGCUGCCCg----- -3'
miRNA:   3'- -CGCGCGUCugCAC-----------UGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 22218 0.66 0.852995
Target:  5'- aCGCGUccguGGGCGUGG-CGCCCgUGUa- -3'
miRNA:   3'- cGCGCG----UCUGCACUgGCGGGgAUAac -5'
6348 5' -56.6 NC_001847.1 + 98625 0.66 0.852995
Target:  5'- uCGCGCAG-CGUGcacACCGCCgCUu--- -3'
miRNA:   3'- cGCGCGUCuGCAC---UGGCGGgGAuaac -5'
6348 5' -56.6 NC_001847.1 + 32053 0.66 0.852995
Target:  5'- cCGCGCGGGCucGGCgGCCCCc---- -3'
miRNA:   3'- cGCGCGUCUGcaCUGgCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 81874 0.66 0.852995
Target:  5'- cGCGCGCcuGGGCGcGcAgCGCCCCg---- -3'
miRNA:   3'- -CGCGCG--UCUGCaC-UgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 105766 0.66 0.852995
Target:  5'- cGCGCGCGGcaGCuccGGCCGCCCg----- -3'
miRNA:   3'- -CGCGCGUC--UGca-CUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 29409 0.66 0.845047
Target:  5'- cCGCGCuGGCGgcgcgGACCgugGCCCCg---- -3'
miRNA:   3'- cGCGCGuCUGCa----CUGG---CGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 83511 0.67 0.836082
Target:  5'- gGCGCugcgugccuuccuGCGGucCGUGcGCCGCCCCggggUGg -3'
miRNA:   3'- -CGCG-------------CGUCu-GCAC-UGGCGGGGaua-AC- -5'
6348 5' -56.6 NC_001847.1 + 92202 0.67 0.828579
Target:  5'- cGCGCGCGG-CGUcGGCCGCUUg----- -3'
miRNA:   3'- -CGCGCGUCuGCA-CUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 47350 0.67 0.828579
Target:  5'- cCGCGUcgaAGACGcggaagaGGCCGCCCCg---- -3'
miRNA:   3'- cGCGCG---UCUGCa------CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 35938 0.67 0.828579
Target:  5'- gGCGCGCcgccGCGcGGCCGCCUCg---- -3'
miRNA:   3'- -CGCGCGuc--UGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 132930 0.67 0.828579
Target:  5'- cGCgGCGCuGGCGgccuacuGCCGCCCCg---- -3'
miRNA:   3'- -CG-CGCGuCUGCac-----UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 2070 0.67 0.836906
Target:  5'- cGCaGCGguGGCGgcGAgCGCCCCg---- -3'
miRNA:   3'- -CG-CGCguCUGCa-CUgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 127010 0.67 0.828579
Target:  5'- uCGCGCAGcACc-GcCCGCCCCUGg-- -3'
miRNA:   3'- cGCGCGUC-UGcaCuGGCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 30117 0.67 0.828579
Target:  5'- cGCgGCGCuGGCGgccuacuGCCGCCCCg---- -3'
miRNA:   3'- -CG-CGCGuCUGCac-----UGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 73639 0.67 0.820072
Target:  5'- uGCGCGCuguuucaggAGGCGUacCCGCCgCUGUg- -3'
miRNA:   3'- -CGCGCG---------UCUGCAcuGGCGGgGAUAac -5'
6348 5' -56.6 NC_001847.1 + 28240 0.67 0.820072
Target:  5'- aGCGCGUGGugGUGGagugggccUCGCUCUUuUUGg -3'
miRNA:   3'- -CGCGCGUCugCACU--------GGCGGGGAuAAC- -5'
6348 5' -56.6 NC_001847.1 + 120938 0.67 0.820072
Target:  5'- gGCGCGCGGGCGUGGUgGCUgaUGUg- -3'
miRNA:   3'- -CGCGCGUCUGCACUGgCGGggAUAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.