miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 107678 0.71 0.615486
Target:  5'- gGCGUGCAGucaGUGACgGCgCCUgcgGUUGg -3'
miRNA:   3'- -CGCGCGUCug-CACUGgCGgGGA---UAAC- -5'
6348 5' -56.6 NC_001847.1 + 78302 0.71 0.615486
Target:  5'- gGUGCuCGGGCGgcugGGCCGCCCCc---- -3'
miRNA:   3'- -CGCGcGUCUGCa---CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 51419 0.71 0.615486
Target:  5'- gGCgGCGCAGACGgaGCCGCCCg----- -3'
miRNA:   3'- -CG-CGCGUCUGCacUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 30511 0.71 0.625725
Target:  5'- gGCGCGcCGGACGUGAgCGCgCUCg---- -3'
miRNA:   3'- -CGCGC-GUCUGCACUgGCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 75282 0.71 0.625725
Target:  5'- cGCGCGCGGcccuCGgcGACCGCgCCUGg-- -3'
miRNA:   3'- -CGCGCGUCu---GCa-CUGGCGgGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 133324 0.71 0.625725
Target:  5'- gGCGCGcCGGACGUGAgCGCgCUCg---- -3'
miRNA:   3'- -CGCGC-GUCUGCACUgGCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 69299 0.7 0.635968
Target:  5'- gGCGUGCGGGCG-GACCgGCUgCCUuUUGg -3'
miRNA:   3'- -CGCGCGUCUGCaCUGG-CGG-GGAuAAC- -5'
6348 5' -56.6 NC_001847.1 + 67350 0.7 0.635968
Target:  5'- uCGCGCGGACGUGGCCcucgGCUCUc---- -3'
miRNA:   3'- cGCGCGUCUGCACUGG----CGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 15305 0.7 0.646209
Target:  5'- uGCGCGCGGGCGUG-CgCGaCCCgUAc-- -3'
miRNA:   3'- -CGCGCGUCUGCACuG-GC-GGGgAUaac -5'
6348 5' -56.6 NC_001847.1 + 103004 0.7 0.646209
Target:  5'- cGUGCGCGGGCGcGGCgGCgCCCa---- -3'
miRNA:   3'- -CGCGCGUCUGCaCUGgCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 121650 0.7 0.646209
Target:  5'- gGCGCGCAcuucGCGgaaGGCCGCCgCUGUg- -3'
miRNA:   3'- -CGCGCGUc---UGCa--CUGGCGGgGAUAac -5'
6348 5' -56.6 NC_001847.1 + 115107 0.7 0.655416
Target:  5'- cCGCGCccaGGGCGgcGGCCGCagggccgCCCUAUUGg -3'
miRNA:   3'- cGCGCG---UCUGCa-CUGGCG-------GGGAUAAC- -5'
6348 5' -56.6 NC_001847.1 + 113409 0.7 0.656438
Target:  5'- cGCGCGCGGGcCGgcgccgGcCCGCgCCCUGcUGg -3'
miRNA:   3'- -CGCGCGUCU-GCa-----CuGGCG-GGGAUaAC- -5'
6348 5' -56.6 NC_001847.1 + 28009 0.7 0.656438
Target:  5'- aGCGCGCGG-CGUG-CCGCgCUUAc-- -3'
miRNA:   3'- -CGCGCGUCuGCACuGGCGgGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 10596 0.7 0.656438
Target:  5'- cGCGCGCGGGcCGgcgccgGcCCGCgCCCUGcUGg -3'
miRNA:   3'- -CGCGCGUCU-GCa-----CuGGCG-GGGAUaAC- -5'
6348 5' -56.6 NC_001847.1 + 29427 0.7 0.666648
Target:  5'- uGCGCGCcagcgagcgcugGGGCGUGgcGCCGCCCg----- -3'
miRNA:   3'- -CGCGCG------------UCUGCAC--UGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 36485 0.7 0.666648
Target:  5'- cUGCGCGGgcGCGUGGCgGCCCUUc--- -3'
miRNA:   3'- cGCGCGUC--UGCACUGgCGGGGAuaac -5'
6348 5' -56.6 NC_001847.1 + 133734 0.7 0.666648
Target:  5'- gGCGCGgGGccGCGUGcCUGCCUgUGUUGu -3'
miRNA:   3'- -CGCGCgUC--UGCACuGGCGGGgAUAAC- -5'
6348 5' -56.6 NC_001847.1 + 82129 0.7 0.666648
Target:  5'- aGCGCGCAG-CG--GCCGCCgCUGUc- -3'
miRNA:   3'- -CGCGCGUCuGCacUGGCGGgGAUAac -5'
6348 5' -56.6 NC_001847.1 + 125387 0.7 0.670724
Target:  5'- gGCGCGCGaggucgagguggaccGACGgcGACUGCCCCg---- -3'
miRNA:   3'- -CGCGCGU---------------CUGCa-CUGGCGGGGauaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.