miRNA display CGI


Results 81 - 100 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 45585 0.66 0.746892
Target:  5'- gAUGGuGCucaCGCGGCCC---GCG-GGCCa -3'
miRNA:   3'- -UGCC-CGc--GCGCCGGGuuuUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 45231 0.66 0.746892
Target:  5'- cGCGGccuCGCGCGGCaCAAccuCGGGcGCCg -3'
miRNA:   3'- -UGCCc--GCGCGCCGgGUUuu-GUUC-CGG- -5'
6349 3' -59 NC_001847.1 + 76 0.66 0.746892
Target:  5'- gGCGGGCcCG-GGCCCGcu-CuGGGCUc -3'
miRNA:   3'- -UGCCCGcGCgCCGGGUuuuGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 118125 0.66 0.746892
Target:  5'- -aGGGCgGCGaGGCCgucuGCGAGGCg -3'
miRNA:   3'- ugCCCG-CGCgCCGGguuuUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 30281 0.66 0.746892
Target:  5'- uGCGgcGGCGCGUGGCCUGGAugucGCAGaucgcGGaCCc -3'
miRNA:   3'- -UGC--CCGCGCGCCGGGUUU----UGUU-----CC-GG- -5'
6349 3' -59 NC_001847.1 + 29404 0.66 0.746892
Target:  5'- gGCGGccGCGCugGCGGCgCGGAcCGuGGCCc -3'
miRNA:   3'- -UGCC--CGCG--CGCCGgGUUUuGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 91767 0.66 0.745934
Target:  5'- cGCGGGCGCuccgucgGCGGCgCu------GGCCg -3'
miRNA:   3'- -UGCCCGCG-------CGCCGgGuuuuguuCCGG- -5'
6349 3' -59 NC_001847.1 + 92785 0.66 0.746892
Target:  5'- cCGaGGCGC-UGGCCaccgAGGACGuGGCCg -3'
miRNA:   3'- uGC-CCGCGcGCCGGg---UUUUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 116313 0.66 0.746892
Target:  5'- uGCGGcGCGCGCGaggacgccguGCCCAugcGCGcgcuGGCg -3'
miRNA:   3'- -UGCC-CGCGCGC----------CGGGUuu-UGUu---CCGg -5'
6349 3' -59 NC_001847.1 + 120704 0.66 0.746892
Target:  5'- cGCGGccGCGCGCucGGCgCCAAAcaGCGGaGCCc -3'
miRNA:   3'- -UGCC--CGCGCG--CCG-GGUUU--UGUUcCGG- -5'
6349 3' -59 NC_001847.1 + 72773 0.66 0.75641
Target:  5'- uCGGGCgGCGCGGCgugCCuGGGCGAaauuucGGCg -3'
miRNA:   3'- uGCCCG-CGCGCCG---GGuUUUGUU------CCGg -5'
6349 3' -59 NC_001847.1 + 72673 0.66 0.75641
Target:  5'- cGCcGGCGacccCGGCCCu--GCuGAGGCCg -3'
miRNA:   3'- -UGcCCGCgc--GCCGGGuuuUG-UUCCGG- -5'
6349 3' -59 NC_001847.1 + 46825 0.66 0.75641
Target:  5'- cGCGcGGCuaaaGCGCGcaaaagucgaccGCCCccgcggcGCAAGGCCa -3'
miRNA:   3'- -UGC-CCG----CGCGC------------CGGGuuu----UGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 29264 0.66 0.75641
Target:  5'- cCGGacGCGCugGCGGCgcacCCGGAGCGcgugcuccGGGCCg -3'
miRNA:   3'- uGCC--CGCG--CGCCG----GGUUUUGU--------UCCGG- -5'
6349 3' -59 NC_001847.1 + 123520 0.66 0.75641
Target:  5'- -aGGGCuGcCGCgGGCUCGgcuaAGGcCAAGGCCg -3'
miRNA:   3'- ugCCCG-C-GCG-CCGGGU----UUU-GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 117333 0.66 0.75641
Target:  5'- gGCGGGgG-GCGGCCUcgcccccCGcGGCCg -3'
miRNA:   3'- -UGCCCgCgCGCCGGGuuuu---GUuCCGG- -5'
6349 3' -59 NC_001847.1 + 40808 0.66 0.755463
Target:  5'- cGCGGugaggauGUGC-CGGCCCAGcAGCccGGCCu -3'
miRNA:   3'- -UGCC-------CGCGcGCCGGGUU-UUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 53319 0.66 0.754515
Target:  5'- gGCGGGCGacaggacgGCGcGCCCcgccgccuccGCGuAGGCCa -3'
miRNA:   3'- -UGCCCGCg-------CGC-CGGGuuu-------UGU-UCCGG- -5'
6349 3' -59 NC_001847.1 + 101871 0.66 0.753565
Target:  5'- cGCGGaggagcucgccuuuGCGCGCGGaCCGcgGCAgcggAGGCg -3'
miRNA:   3'- -UGCC--------------CGCGCGCCgGGUuuUGU----UCCGg -5'
6349 3' -59 NC_001847.1 + 79933 0.66 0.752615
Target:  5'- gACGGacGCaaagacgGCGCGGgCCAGAACGAGcucgcggauauauuGCCa -3'
miRNA:   3'- -UGCC--CG-------CGCGCCgGGUUUUGUUC--------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.