miRNA display CGI


Results 61 - 80 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 110616 0.66 0.763009
Target:  5'- cACGGaaaucgugcaGCGCGCGaGCCCcGAcgcccacggcguguGCAAcuuGGCCa -3'
miRNA:   3'- -UGCC----------CGCGCGC-CGGGuUU--------------UGUU---CCGG- -5'
6349 3' -59 NC_001847.1 + 41386 0.66 0.763009
Target:  5'- nCGGGCcgccgccggcagccGCGCGGCCUccAGCu--GCCg -3'
miRNA:   3'- uGCCCG--------------CGCGCCGGGuuUUGuucCGG- -5'
6349 3' -59 NC_001847.1 + 117333 0.66 0.75641
Target:  5'- gGCGGGgG-GCGGCCUcgcccccCGcGGCCg -3'
miRNA:   3'- -UGCCCgCgCGCCGGGuuuu---GUuCCGG- -5'
6349 3' -59 NC_001847.1 + 40808 0.66 0.755463
Target:  5'- cGCGGugaggauGUGC-CGGCCCAGcAGCccGGCCu -3'
miRNA:   3'- -UGCC-------CGCGcGCCGGGUU-UUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 53319 0.66 0.754515
Target:  5'- gGCGGGCGacaggacgGCGcGCCCcgccgccuccGCGuAGGCCa -3'
miRNA:   3'- -UGCCCGCg-------CGC-CGGGuuu-------UGU-UCCGG- -5'
6349 3' -59 NC_001847.1 + 101871 0.66 0.753565
Target:  5'- cGCGGaggagcucgccuuuGCGCGCGGaCCGcgGCAgcggAGGCg -3'
miRNA:   3'- -UGCC--------------CGCGCGCCgGGUuuUGU----UCCGg -5'
6349 3' -59 NC_001847.1 + 79933 0.66 0.752615
Target:  5'- gACGGacGCaaagacgGCGCGGgCCAGAACGAGcucgcggauauauuGCCa -3'
miRNA:   3'- -UGCC--CG-------CGCGCCgGGUUUUGUUC--------------CGG- -5'
6349 3' -59 NC_001847.1 + 120704 0.66 0.746892
Target:  5'- cGCGGccGCGCGCucGGCgCCAAAcaGCGGaGCCc -3'
miRNA:   3'- -UGCC--CGCGCG--CCG-GGUUU--UGUUcCGG- -5'
6349 3' -59 NC_001847.1 + 116313 0.66 0.746892
Target:  5'- uGCGGcGCGCGCGaggacgccguGCCCAugcGCGcgcuGGCg -3'
miRNA:   3'- -UGCC-CGCGCGC----------CGGGUuu-UGUu---CCGg -5'
6349 3' -59 NC_001847.1 + 92785 0.66 0.746892
Target:  5'- cCGaGGCGC-UGGCCaccgAGGACGuGGCCg -3'
miRNA:   3'- uGC-CCGCGcGCCGGg---UUUUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 123520 0.66 0.75641
Target:  5'- -aGGGCuGcCGCgGGCUCGgcuaAGGcCAAGGCCg -3'
miRNA:   3'- ugCCCG-C-GCG-CCGGGU----UUU-GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 29264 0.66 0.75641
Target:  5'- cCGGacGCGCugGCGGCgcacCCGGAGCGcgugcuccGGGCCg -3'
miRNA:   3'- uGCC--CGCG--CGCCG----GGUUUUGU--------UCCGG- -5'
6349 3' -59 NC_001847.1 + 104239 0.66 0.75641
Target:  5'- cGCcGGCGCGCGcCUCAccGGGCugcGGCCg -3'
miRNA:   3'- -UGcCCGCGCGCcGGGU--UUUGuu-CCGG- -5'
6349 3' -59 NC_001847.1 + 86348 0.66 0.75641
Target:  5'- cGauGGCGCcgGCGaggcGCCCGcAGACGAGGCg -3'
miRNA:   3'- -UgcCCGCG--CGC----CGGGU-UUUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 52244 0.66 0.75641
Target:  5'- cCGGGCGcCGCGcGCCgCG--GCuuGGCUg -3'
miRNA:   3'- uGCCCGC-GCGC-CGG-GUuuUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 30585 0.66 0.75641
Target:  5'- cGCGGuggaguaccucuGCGCGCGGCuggCCGcgGCGcGGCg -3'
miRNA:   3'- -UGCC------------CGCGCGCCG---GGUuuUGUuCCGg -5'
6349 3' -59 NC_001847.1 + 87578 0.66 0.75641
Target:  5'- gGCGcGUGCGCGGCC----GCcGGGCUc -3'
miRNA:   3'- -UGCcCGCGCGCCGGguuuUGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 72773 0.66 0.75641
Target:  5'- uCGGGCgGCGCGGCgugCCuGGGCGAaauuucGGCg -3'
miRNA:   3'- uGCCCG-CGCGCCG---GGuUUUGUU------CCGg -5'
6349 3' -59 NC_001847.1 + 72673 0.66 0.75641
Target:  5'- cGCcGGCGacccCGGCCCu--GCuGAGGCCg -3'
miRNA:   3'- -UGcCCGCgc--GCCGGGuuuUG-UUCCGG- -5'
6349 3' -59 NC_001847.1 + 46825 0.66 0.75641
Target:  5'- cGCGcGGCuaaaGCGCGcaaaagucgaccGCCCccgcggcGCAAGGCCa -3'
miRNA:   3'- -UGC-CCG----CGCGC------------CGGGuuu----UGUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.