miRNA display CGI


Results 61 - 80 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 132267 0.77 0.215509
Target:  5'- cGCGcGGCGCgGCGGCCCGc-GCGucGGCCu -3'
miRNA:   3'- -UGC-CCGCG-CGCCGGGUuuUGUu-CCGG- -5'
6349 3' -59 NC_001847.1 + 87847 0.76 0.237353
Target:  5'- gGCGGGCGUGaUGGCCC---GCG-GGCCu -3'
miRNA:   3'- -UGCCCGCGC-GCCGGGuuuUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 33628 0.81 0.120938
Target:  5'- gACGGGCGCgGCGGCUgAccGCGAGGCg -3'
miRNA:   3'- -UGCCCGCG-CGCCGGgUuuUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 30750 0.81 0.124093
Target:  5'- gGCGGGCGUagaccGCGGCCCGcuGCAGcGCCg -3'
miRNA:   3'- -UGCCCGCG-----CGCCGGGUuuUGUUcCGG- -5'
6349 3' -59 NC_001847.1 + 34365 0.8 0.137493
Target:  5'- gGCGGGCGCugauGCGGCCgAAacAACGGcGGCCg -3'
miRNA:   3'- -UGCCCGCG----CGCCGGgUU--UUGUU-CCGG- -5'
6349 3' -59 NC_001847.1 + 103689 0.79 0.160092
Target:  5'- cGCGcGGCG-GCGGCCCGcgcCGGGGCCg -3'
miRNA:   3'- -UGC-CCGCgCGCCGGGUuuuGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 124934 0.79 0.16417
Target:  5'- aGCGGGCGCGCccugGGCCCGGcGGCGGcGGCg -3'
miRNA:   3'- -UGCCCGCGCG----CCGGGUU-UUGUU-CCGg -5'
6349 3' -59 NC_001847.1 + 19191 0.78 0.176529
Target:  5'- gGCGGGgGCggggucuGUGGCCCAGAcgGCGAGuGCCg -3'
miRNA:   3'- -UGCCCgCG-------CGCCGGGUUU--UGUUC-CGG- -5'
6349 3' -59 NC_001847.1 + 128813 0.78 0.176969
Target:  5'- gGCGGGCGCGCaGGCgcgcaCAAAA-AGGGCCa -3'
miRNA:   3'- -UGCCCGCGCG-CCGg----GUUUUgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 125385 0.78 0.190648
Target:  5'- aGCGGuaaGCGgGCGcCCCGGGGCAGGGCCc -3'
miRNA:   3'- -UGCC---CGCgCGCcGGGUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 132043 0.74 0.321241
Target:  5'- gGCGGGC-CGCGGCCU---GCc-GGCCg -3'
miRNA:   3'- -UGCCCGcGCGCCGGGuuuUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 61944 0.74 0.314064
Target:  5'- aGCGGcG-GCGCGGCCCGc-GCG-GGCCg -3'
miRNA:   3'- -UGCC-CgCGCGCCGGGUuuUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 36488 0.76 0.243097
Target:  5'- cGCGGGCGCgugGCGGCCCuu--CuGGGCg -3'
miRNA:   3'- -UGCCCGCG---CGCCGGGuuuuGuUCCGg -5'
6349 3' -59 NC_001847.1 + 80852 0.76 0.248955
Target:  5'- cCGGGCG-GCGGCgCGcguCGAGGCCg -3'
miRNA:   3'- uGCCCGCgCGCCGgGUuuuGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 82904 0.75 0.263492
Target:  5'- cCGcGGCGCGCGgcGCCCGGGGgcuuuuucucgcuguCGAGGCCg -3'
miRNA:   3'- uGC-CCGCGCGC--CGGGUUUU---------------GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 49706 0.75 0.273561
Target:  5'- uACGGGgGCGCGGCgCCcguGCAAGugggcGCCg -3'
miRNA:   3'- -UGCCCgCGCGCCG-GGuuuUGUUC-----CGG- -5'
6349 3' -59 NC_001847.1 + 103432 0.75 0.278062
Target:  5'- -aGcGGCGCGCGGCCCGc-GCcuccccccgcccccGAGGCCc -3'
miRNA:   3'- ugC-CCGCGCGCCGGGUuuUG--------------UUCCGG- -5'
6349 3' -59 NC_001847.1 + 30203 0.75 0.292593
Target:  5'- uGCGcGGCGCGCGcGCCgAAGccGCGcgcgcccGGGCCg -3'
miRNA:   3'- -UGC-CCGCGCGC-CGGgUUU--UGU-------UCCGG- -5'
6349 3' -59 NC_001847.1 + 47870 0.75 0.293267
Target:  5'- cGCGGGCGCGCGcagcgcgcgcgcGCCCGcgcgcCGGGGCg -3'
miRNA:   3'- -UGCCCGCGCGC------------CGGGUuuu--GUUCCGg -5'
6349 3' -59 NC_001847.1 + 50062 0.74 0.30701
Target:  5'- cGCGGguccGCGCGCGGCgCGGAcccggGCGcGGCCa -3'
miRNA:   3'- -UGCC----CGCGCGCCGgGUUU-----UGUuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.