miRNA display CGI


Results 41 - 60 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 98019 0.81 0.120938
Target:  5'- cUGGGCGUGCGcGcCCCAGAGCAugaacaccagcGGGCCg -3'
miRNA:   3'- uGCCCGCGCGC-C-GGGUUUUGU-----------UCCGG- -5'
6349 3' -59 NC_001847.1 + 18734 0.76 0.237353
Target:  5'- ---aGCGCGCGGCCCGGGGCccaGAGcGCCg -3'
miRNA:   3'- ugccCGCGCGCCGGGUUUUG---UUC-CGG- -5'
6349 3' -59 NC_001847.1 + 17377 0.75 0.273561
Target:  5'- aGCGGGCGCGCGGUgCGucGugAcGGUCa -3'
miRNA:   3'- -UGCCCGCGCGCCGgGUu-UugUuCCGG- -5'
6349 3' -59 NC_001847.1 + 134916 0.75 0.267232
Target:  5'- -gGGGCGCGaGGCCC-GGGCucGGGCCc -3'
miRNA:   3'- ugCCCGCGCgCCGGGuUUUGu-UCCGG- -5'
6349 3' -59 NC_001847.1 + 35327 0.76 0.226208
Target:  5'- aGCGGGCGUGC-GCCUGgagcugccGAGCGAGGCUc -3'
miRNA:   3'- -UGCCCGCGCGcCGGGU--------UUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 103689 0.79 0.160092
Target:  5'- cGCGcGGCG-GCGGCCCGcgcCGGGGCCg -3'
miRNA:   3'- -UGC-CCGCgCGCCGGGUuuuGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 33628 0.81 0.120938
Target:  5'- gACGGGCGCgGCGGCUgAccGCGAGGCg -3'
miRNA:   3'- -UGCCCGCG-CGCCGGgUuuUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 41820 0.81 0.117857
Target:  5'- cGCGGGCGgGCGGCgCGGGuccCAGGGCUg -3'
miRNA:   3'- -UGCCCGCgCGCCGgGUUUu--GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 52519 0.78 0.168341
Target:  5'- cGCGGcCGCGCGGCCCGGGGgAuGGUCg -3'
miRNA:   3'- -UGCCcGCGCGCCGGGUUUUgUuCCGG- -5'
6349 3' -59 NC_001847.1 + 125385 0.78 0.190648
Target:  5'- aGCGGuaaGCGgGCGcCCCGGGGCAGGGCCc -3'
miRNA:   3'- -UGCC---CGCgCGCcGGGUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 26761 0.78 0.185988
Target:  5'- cGCGGGUGCGCGGCCUGGucaguGCGcGcGCCc -3'
miRNA:   3'- -UGCCCGCGCGCCGGGUUu----UGUuC-CGG- -5'
6349 3' -59 NC_001847.1 + 101142 0.79 0.16417
Target:  5'- gAUGGGCGCGgGGgCUggGGcCGGGGCCg -3'
miRNA:   3'- -UGCCCGCGCgCCgGGuuUU-GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 131135 0.8 0.134023
Target:  5'- gGCGGGCGcCG-GGCCCGGcgccccGCGGGGCCg -3'
miRNA:   3'- -UGCCCGC-GCgCCGGGUUu-----UGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 6745 0.76 0.248955
Target:  5'- aGCGGGCGUcgucugcgguGCGGCCgGu-GCGAGGCg -3'
miRNA:   3'- -UGCCCGCG----------CGCCGGgUuuUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 36488 0.76 0.243097
Target:  5'- cGCGGGCGCgugGCGGCCCuu--CuGGGCg -3'
miRNA:   3'- -UGCCCGCG---CGCCGGGuuuuGuUCCGg -5'
6349 3' -59 NC_001847.1 + 132267 0.77 0.215509
Target:  5'- cGCGcGGCGCgGCGGCCCGc-GCGucGGCCu -3'
miRNA:   3'- -UGC-CCGCG-CGCCGGGUuuUGUu-CCGG- -5'
6349 3' -59 NC_001847.1 + 100884 0.75 0.261022
Target:  5'- gGCaGGgGCGCGGCCggcggGAGACGGGGUCg -3'
miRNA:   3'- -UGcCCgCGCGCCGGg----UUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 79076 0.65 0.780633
Target:  5'- cCGGGCGCGUGcgacgugugcccguGCgCCGcgccgugccugugGAAgAAGGCCc -3'
miRNA:   3'- uGCCCGCGCGC--------------CG-GGU-------------UUUgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 60845 0.75 0.277415
Target:  5'- cGCGGcGCuGCGCGGCgCCAGGGCGuccagcgcggggcGGCCg -3'
miRNA:   3'- -UGCC-CG-CGCGCCG-GGUUUUGUu------------CCGG- -5'
6349 3' -59 NC_001847.1 + 21870 0.76 0.25493
Target:  5'- uGCGGGgGCuGCGGCgCGcuGcCGAGGCCg -3'
miRNA:   3'- -UGCCCgCG-CGCCGgGUuuU-GUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.