miRNA display CGI

Results 41 - 60 of 1036 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6349	3'	-59	NC_001847.1	+	4183	0.7	0.537416
	Target:  5'- uUGGGC-CGCGcGCCCGu----GGGCCg -3' miRNA:   3'- uGCCCGcGCGC-CGGGUuuuguUCCGG- -5'
6349	3'	-59	NC_001847.1	+	4389	0.66	0.775115
	Target:  5'- cGCGcGCGcCGCGGCCCA-GGCGcuGUCc -3' miRNA:   3'- -UGCcCGC-GCGCCGGGUuUUGUucCGG- -5'
6349	3'	-59	NC_001847.1	+	4583	0.68	0.637639
	Target:  5'- uGCGGGUcgcgguGCGCGGCgaCGAAGgc-GGCCa -3' miRNA:   3'- -UGCCCG------CGCGCCGg-GUUUUguuCCGG- -5'
6349	3'	-59	NC_001847.1	+	4628	0.75	0.269749
	Target:  5'- cGCGGGCggcccgccggcgcucGCGCGccucaGCCCGacgcgccgcgucGAGCAGGGCCg -3' miRNA:   3'- -UGCCCG---------------CGCGC-----CGGGU------------UUUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	4793	0.7	0.498713
	Target:  5'- gUGGGUGCGUgcgguGGCCUggggGAGACGGGGUa -3' miRNA:   3'- uGCCCGCGCG-----CCGGG----UUUUGUUCCGg -5'
6349	3'	-59	NC_001847.1	+	4813	0.8	0.14468
	Target:  5'- gACGaGGCGCGCGauGCCCuuGAGCGugGGGCCg -3' miRNA:   3'- -UGC-CCGCGCGC--CGGGu-UUUGU--UCCGG- -5'
6349	3'	-59	NC_001847.1	+	4874	0.7	0.537416
	Target:  5'- -gGGGCG-GCGGgCagcGGCAGGGCCc -3' miRNA:   3'- ugCCCGCgCGCCgGguuUUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	4987	0.71	0.47052
	Target:  5'- -gGGGUGCgGCGGCCgcggCAAAGCGcGGCg -3' miRNA:   3'- ugCCCGCG-CGCCGG----GUUUUGUuCCGg -5'
6349	3'	-59	NC_001847.1	+	5038	0.7	0.497761
	Target:  5'- uCGGGCGaccggcgGCGGCuCCGAcgggacgGACGgcGGGCCg -3' miRNA:   3'- uGCCCGCg------CGCCG-GGUU-------UUGU--UCCGG- -5'
6349	3'	-59	NC_001847.1	+	5063	0.76	0.248955
	Target:  5'- cGCGGucGgGCGCGGCCCAGGAC--GGCg -3' miRNA:   3'- -UGCC--CgCGCGCCGGGUUUUGuuCCGg -5'
6349	3'	-59	NC_001847.1	+	5154	0.68	0.627517
	Target:  5'- -gGGGUGUGCGGgCCA-GGCAucGGCg -3' miRNA:   3'- ugCCCGCGCGCCgGGUuUUGUu-CCGg -5'
6349	3'	-59	NC_001847.1	+	5357	0.7	0.51502
	Target:  5'- cGCGcGGCGCGgccgGGCCCAggcuccggcgguccGAGCGgccggcggcacAGGCCg -3' miRNA:   3'- -UGC-CCGCGCg---CCGGGU--------------UUUGU-----------UCCGG- -5'
6349	3'	-59	NC_001847.1	+	5623	0.68	0.60729
	Target:  5'- gUGGGCGcCGCGGUCCc--GCGcGcGCCa -3' miRNA:   3'- uGCCCGC-GCGCCGGGuuuUGUuC-CGG- -5'
6349	3'	-59	NC_001847.1	+	5827	0.7	0.498713
	Target:  5'- cCGGGUGCGUGcagcacccaCCCGAAGCGAGccGCCu -3' miRNA:   3'- uGCCCGCGCGCc--------GGGUUUUGUUC--CGG- -5'
6349	3'	-59	NC_001847.1	+	6312	0.69	0.596192
	Target:  5'- uCGGccucgauGCGCGCGGCCaCGuacGCGGGuGCCc -3' miRNA:   3'- uGCC-------CGCGCGCCGG-GUuu-UGUUC-CGG- -5'
6349	3'	-59	NC_001847.1	+	6364	0.72	0.415856
	Target:  5'- cGCGGGCGUagccgcuGCGGCagCAGAaggcgGCAAGcGCCg -3' miRNA:   3'- -UGCCCGCG-------CGCCGg-GUUU-----UGUUC-CGG- -5'
6349	3'	-59	NC_001847.1	+	6506	0.73	0.383011
	Target:  5'- cCGGGCGUGUGuCCCAAGGgGaaaaagccuGGGCCa -3' miRNA:   3'- uGCCCGCGCGCcGGGUUUUgU---------UCCGG- -5'
6349	3'	-59	NC_001847.1	+	6514	0.67	0.713847
	Target:  5'- cGCcGGCGCGCucaGCCUGGAACAcguagaagcgcguGGCCa -3' miRNA:   3'- -UGcCCGCGCGc--CGGGUUUUGUu------------CCGG- -5'
6349	3'	-59	NC_001847.1	+	6697	0.71	0.489229
	Target:  5'- cCGGGCGCGC-GC-----GCAGGGCCg -3' miRNA:   3'- uGCCCGCGCGcCGgguuuUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	6745	0.76	0.248955
	Target:  5'- aGCGGGCGUcgucugcgguGCGGCCgGu-GCGAGGCg -3' miRNA:   3'- -UGCCCGCG----------CGCCGGgUuuUGUUCCGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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